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Results: 1 to 20 of 74

1.

Metatranscriptomic analyses of chlorophototrophs of a hot-spring microbial mat.

Liu Z, Klatt CG, Wood JM, Rusch DB, Ludwig M, Wittekindt N, Tomsho LP, Schuster SC, Ward DM, Bryant DA.

ISME J. 2011 Aug;5(8):1279-90. doi: 10.1038/ismej.2011.37. Epub 2011 Jun 23.

PMID:
21697962
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Community ecology of hot spring cyanobacterial mats: predominant populations and their functional potential.

Klatt CG, Wood JM, Rusch DB, Bateson MM, Hamamura N, Heidelberg JF, Grossman AR, Bhaya D, Cohan FM, Kühl M, Bryant DA, Ward DM.

ISME J. 2011 Aug;5(8):1262-78. doi: 10.1038/ismej.2011.73. Epub 2011 Jun 23.

PMID:
21697961
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Evolution and classification of the CRISPR-Cas systems.

Makarova KS, Haft DH, Barrangou R, Brouns SJ, Charpentier E, Horvath P, Moineau S, Mojica FJ, Wolf YI, Yakunin AF, van der Oost J, Koonin EV.

Nat Rev Microbiol. 2011 Jun;9(6):467-77. doi: 10.1038/nrmicro2577. Epub 2011 May 9.

PMID:
21552286
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

CRISPR-based adaptive immune systems.

Terns MP, Terns RM.

Curr Opin Microbiol. 2011 Jun;14(3):321-7. doi: 10.1016/j.mib.2011.03.005. Epub 2011 Apr 29. Review.

PMID:
21531607
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

CRISPR-based immune systems of the Sulfolobales: complexity and diversity.

Garrett RA, Shah SA, Vestergaard G, Deng L, Gudbergsdottir S, Kenchappa CS, Erdmann S, She Q.

Biochem Soc Trans. 2011 Jan;39(1):51-7. doi: 10.1042/BST0390051. Review.

PMID:
21265746
[PubMed - indexed for MEDLINE]
6.

Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group.

Nunoura T, Takaki Y, Kakuta J, Nishi S, Sugahara J, Kazama H, Chee GJ, Hattori M, Kanai A, Atomi H, Takai K, Takami H.

Nucleic Acids Res. 2011 Apr;39(8):3204-23. doi: 10.1093/nar/gkq1228. Epub 2010 Dec 15.

PMID:
21169198
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

CDD: a Conserved Domain Database for the functional annotation of proteins.

Marchler-Bauer A, Lu S, Anderson JB, Chitsaz F, Derbyshire MK, DeWeese-Scott C, Fong JH, Geer LY, Geer RC, Gonzales NR, Gwadz M, Hurwitz DI, Jackson JD, Ke Z, Lanczycki CJ, Lu F, Marchler GH, Mullokandov M, Omelchenko MV, Robertson CL, Song JS, Thanki N, Yamashita RA, Zhang D, Zhang N, Zheng C, Bryant SH.

Nucleic Acids Res. 2011 Jan;39(Database issue):D225-9. doi: 10.1093/nar/gkq1189. Epub 2010 Nov 24.

PMID:
21109532
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Use of cellular CRISPR (clusters of regularly interspaced short palindromic repeats) spacer-based microarrays for detection of viruses in environmental samples.

Snyder JC, Bateson MM, Lavin M, Young MJ.

Appl Environ Microbiol. 2010 Nov;76(21):7251-8. doi: 10.1128/AEM.01109-10. Epub 2010 Sep 17.

PMID:
20851987
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Evolution of diverse cell division and vesicle formation systems in Archaea.

Makarova KS, Yutin N, Bell SD, Koonin EV.

Nat Rev Microbiol. 2010 Oct;8(10):731-41. doi: 10.1038/nrmicro2406. Epub 2010 Sep 6.

PMID:
20818414
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Dali server: conservation mapping in 3D.

Holm L, Rosenström P.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W545-9. doi: 10.1093/nar/gkq366. Epub 2010 May 10.

PMID:
20457744
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Artificial and natural duplicates in pyrosequencing reads of metagenomic data.

Niu B, Fu L, Sun S, Li W.

BMC Bioinformatics. 2010 Apr 13;11:187. doi: 10.1186/1471-2105-11-187.

PMID:
20388221
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Metagenomes from high-temperature chemotrophic systems reveal geochemical controls on microbial community structure and function.

Inskeep WP, Rusch DB, Jay ZJ, Herrgard MJ, Kozubal MA, Richardson TH, Macur RE, Hamamura N, Jennings Rd, Fouke BW, Reysenbach AL, Roberto F, Young M, Schwartz A, Boyd ES, Badger JH, Mathur EJ, Ortmann AC, Bateson M, Geesey G, Frazier M.

PLoS One. 2010 Mar 19;5(3):e9773. doi: 10.1371/journal.pone.0009773.

PMID:
20333304
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Viral and microbial community dynamics in four aquatic environments.

Rodriguez-Brito B, Li L, Wegley L, Furlan M, Angly F, Breitbart M, Buchanan J, Desnues C, Dinsdale E, Edwards R, Felts B, Haynes M, Liu H, Lipson D, Mahaffy J, Martin-Cuadrado AB, Mira A, Nulton J, Pasić L, Rayhawk S, Rodriguez-Mueller J, Rodriguez-Valera F, Salamon P, Srinagesh S, Thingstad TF, Tran T, Thurber RV, Willner D, Youle M, Rohwer F.

ISME J. 2010 Jun;4(6):739-51. doi: 10.1038/ismej.2010.1. Epub 2010 Feb 11.

PMID:
20147985
[PubMed - indexed for MEDLINE]
14.

RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex.

Hale CR, Zhao P, Olson S, Duff MO, Graveley BR, Wells L, Terns RM, Terns MP.

Cell. 2009 Nov 25;139(5):945-56. doi: 10.1016/j.cell.2009.07.040.

PMID:
19945378
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Metagenomic analysis of RNA viruses in a fresh water lake.

Djikeng A, Kuzmickas R, Anderson NG, Spiro DJ.

PLoS One. 2009 Sep 29;4(9):e7264. doi: 10.1371/journal.pone.0007264.

PMID:
19787045
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

RNA virus genomics: a world of possibilities.

Holmes EC.

J Clin Invest. 2009 Sep;119(9):2488-95. doi: 10.1172/JCI38050. Review.

PMID:
19729846
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Infrastructure for the life sciences: design and implementation of the UniProt website.

Jain E, Bairoch A, Duvaud S, Phan I, Redaschi N, Suzek BE, Martin MJ, McGarvey P, Gasteiger E.

BMC Bioinformatics. 2009 May 8;10:136. doi: 10.1186/1471-2105-10-136.

PMID:
19426475
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

FastTree: computing large minimum evolution trees with profiles instead of a distance matrix.

Price MN, Dehal PS, Arkin AP.

Mol Biol Evol. 2009 Jul;26(7):1641-50. doi: 10.1093/molbev/msp077. Epub 2009 Apr 17.

PMID:
19377059
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

An ssDNA virus infecting archaea: a new lineage of viruses with a membrane envelope.

Pietilä MK, Roine E, Paulin L, Kalkkinen N, Bamford DH.

Mol Microbiol. 2009 Apr;72(2):307-19. doi: 10.1111/j.1365-2958.2009.06642.x. Epub 2009 Mar 4.

PMID:
19298373
[PubMed - indexed for MEDLINE]
20.

Protein structure prediction on the Web: a case study using the Phyre server.

Kelley LA, Sternberg MJ.

Nat Protoc. 2009;4(3):363-71. doi: 10.1038/nprot.2009.2.

PMID:
19247286
[PubMed - indexed for MEDLINE]

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