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Results: 1 to 20 of 58

References for PMC Articles for PubMed (Select 22347367)

1.

The Drosophila melanogaster Genetic Reference Panel.

Mackay TF, Richards S, Stone EA, Barbadilla A, Ayroles JF, Zhu D, Casillas S, Han Y, Magwire MM, Cridland JM, Richardson MF, Anholt RR, Barrón M, Bess C, Blankenburg KP, Carbone MA, Castellano D, Chaboub L, Duncan L, Harris Z, Javaid M, Jayaseelan JC, Jhangiani SN, Jordan KW, Lara F, Lawrence F, Lee SL, Librado P, Linheiro RS, Lyman RF, Mackey AJ, Munidasa M, Muzny DM, Nazareth L, Newsham I, Perales L, Pu LL, Qu C, Ràmia M, Reid JG, Rollmann SM, Rozas J, Saada N, Turlapati L, Worley KC, Wu YQ, Yamamoto A, Zhu Y, Bergman CM, Thornton KR, Mittelman D, Gibbs RA.

Nature. 2012 Feb 8;482(7384):173-8. doi: 10.1038/nature10811.

2.

A comprehensive map of mobile element insertion polymorphisms in humans.

Stewart C, Kural D, Strömberg MP, Walker JA, Konkel MK, Stütz AM, Urban AE, Grubert F, Lam HY, Lee WP, Busby M, Indap AR, Garrison E, Huff C, Xing J, Snyder MP, Jorde LB, Batzer MA, Korbel JO, Marth GT; 1000 Genomes Project.

PLoS Genet. 2011 Aug;7(8):e1002236. doi: 10.1371/journal.pgen.1002236. Epub 2011 Aug 18.

3.

High-throughput semiquantitative analysis of insertional mutations in heterogeneous tumors.

Koudijs MJ, Klijn C, van der Weyden L, Kool J, ten Hoeve J, Sie D, Prasetyanti PR, Schut E, Kas S, Whipp T, Cuppen E, Wessels L, Adams DJ, Jonkers J.

Genome Res. 2011 Dec;21(12):2181-9. doi: 10.1101/gr.112763.110. Epub 2011 Aug 18.

4.

Integration specificity of LTR-retrotransposons and retroviruses in the Drosophila melanogaster genome.

Nefedova LN, Mannanova MM, Kim AI.

Virus Genes. 2011 Apr;42(2):297-306. doi: 10.1007/s11262-010-0566-4. Epub 2011 Jan 8.

PMID:
21369828
5.

T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing data.

Fiston-Lavier AS, Carrigan M, Petrov DA, González J.

Nucleic Acids Res. 2011 Mar;39(6):e36. doi: 10.1093/nar/gkq1291. Epub 2010 Dec 21.

6.

The mechanism of retroviral integration from X-ray structures of its key intermediates.

Maertens GN, Hare S, Cherepanov P.

Nature. 2010 Nov 11;468(7321):326-9. doi: 10.1038/nature09517.

7.

The Gypsy Database (GyDB) of mobile genetic elements: release 2.0.

Llorens C, Futami R, Covelli L, Domínguez-Escribá L, Viu JM, Tamarit D, Aguilar-Rodríguez J, Vicente-Ripolles M, Fuster G, Bernet GP, Maumus F, Munoz-Pomer A, Sempere JM, Latorre A, Moya A.

Nucleic Acids Res. 2011 Jan;39(Database issue):D70-4. doi: 10.1093/nar/gkq1061. Epub 2010 Oct 29.

8.

Natural mutagenesis of human genomes by endogenous retrotransposons.

Iskow RC, McCabe MT, Mills RE, Torene S, Pittard WS, Neuwald AF, Van Meir EG, Vertino PM, Devine SE.

Cell. 2010 Jun 25;141(7):1253-61. doi: 10.1016/j.cell.2010.05.020.

9.

Mobile element scanning (ME-Scan) by targeted high-throughput sequencing.

Witherspoon DJ, Xing J, Zhang Y, Watkins WS, Batzer MA, Jorde LB.

BMC Genomics. 2010 Jun 30;11:410. doi: 10.1186/1471-2164-11-410.

10.

Population genomic inferences from sparse high-throughput sequencing of two populations of Drosophila melanogaster.

Sackton TB, Kulathinal RJ, Bergman CM, Quinlan AR, Dopman EB, Carneiro M, Marth GT, Hartl DL, Clark AG.

Genome Biol Evol. 2009 Nov 18;1:449-65. doi: 10.1093/gbe/evp048.

11.

Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome.

Quinlan AR, Clark RA, Sokolova S, Leibowitz ML, Zhang Y, Hurles ME, Mell JC, Hall IM.

Genome Res. 2010 May;20(5):623-35. doi: 10.1101/gr.102970.109. Epub 2010 Mar 22.

12.

Large-scale discovery of insertion hotspots and preferential integration sites of human transposed elements.

Levy A, Schwartz S, Ast G.

Nucleic Acids Res. 2010 Mar;38(5):1515-30. doi: 10.1093/nar/gkp1134. Epub 2009 Dec 14.

13.

Transpositionally active episomal hAT elements.

O'Brochta DA, Stosic CD, Pilitt K, Subramanian RA, Hice RH, Atkinson PW.

BMC Mol Biol. 2009 Dec 14;10:108. doi: 10.1186/1471-2199-10-108.

14.

Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants.

Langridge GC, Phan MD, Turner DJ, Perkins TT, Parts L, Haase J, Charles I, Maskell DJ, Peters SE, Dougan G, Wain J, Parkhill J, Turner AK.

Genome Res. 2009 Dec;19(12):2308-16. doi: 10.1101/gr.097097.109. Epub 2009 Oct 13.

15.

miRExpress: analyzing high-throughput sequencing data for profiling microRNA expression.

Wang WC, Lin FM, Chang WC, Lin KY, Huang HD, Lin NS.

BMC Bioinformatics. 2009 Oct 12;10:328. doi: 10.1186/1471-2105-10-328.

16.

Tracking insertion mutants within libraries by deep sequencing and a genome-wide screen for Haemophilus genes required in the lung.

Gawronski JD, Wong SM, Giannoukos G, Ward DV, Akerley BJ.

Proc Natl Acad Sci U S A. 2009 Sep 22;106(38):16422-7. doi: 10.1073/pnas.0906627106. Epub 2009 Sep 4.

17.

Tn-seq: high-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms.

van Opijnen T, Bodi KL, Camilli A.

Nat Methods. 2009 Oct;6(10):767-72. doi: 10.1038/nmeth.1377. Epub 2009 Sep 20.

18.

Molecular architecture of the Mos1 paired-end complex: the structural basis of DNA transposition in a eukaryote.

Richardson JM, Colloms SD, Finnegan DJ, Walkinshaw MD.

Cell. 2009 Sep 18;138(6):1096-108. doi: 10.1016/j.cell.2009.07.012.

19.

Identifying genetic determinants needed to establish a human gut symbiont in its habitat.

Goodman AL, McNulty NP, Zhao Y, Leip D, Mitra RD, Lozupone CA, Knight R, Gordon JI.

Cell Host Microbe. 2009 Sep 17;6(3):279-89. doi: 10.1016/j.chom.2009.08.003.

20.

Genome-wide analysis of Tol2 transposon reintegration in zebrafish.

Kondrychyn I, Garcia-Lecea M, Emelyanov A, Parinov S, Korzh V.

BMC Genomics. 2009 Sep 8;10:418. doi: 10.1186/1471-2164-10-418.

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