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Results: 1 to 20 of 62

1.

Phylogenomics reveals deep molluscan relationships.

Kocot KM, Cannon JT, Todt C, Citarella MR, Kohn AB, Meyer A, Santos SR, Schander C, Moroz LL, Lieb B, Halanych KM.

Nature. 2011 Sep 4;477(7365):452-6. doi: 10.1038/nature10382.

PMID:
21892190
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Using the Acropora digitifera genome to understand coral responses to environmental change.

Shinzato C, Shoguchi E, Kawashima T, Hamada M, Hisata K, Tanaka M, Fujie M, Fujiwara M, Koyanagi R, Ikuta T, Fujiyama A, Miller DJ, Satoh N.

Nature. 2011 Jul 24;476(7360):320-3. doi: 10.1038/nature10249.

PMID:
21785439
[PubMed - indexed for MEDLINE]
3.

Deep sequencing of ESTs from nacreous and prismatic layer producing tissues and a screen for novel shell formation-related genes in the pearl oyster.

Kinoshita S, Wang N, Inoue H, Maeyama K, Okamoto K, Nagai K, Kondo H, Hirono I, Asakawa S, Watabe S.

PLoS One. 2011;6(6):e21238. doi: 10.1371/journal.pone.0021238. Epub 2011 Jun 22.

PMID:
21731681
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Genome structure analysis of molluscs revealed whole genome duplication and lineage specific repeat variation.

Yoshida MA, Ishikura Y, Moritaki T, Shoguchi E, Shimizu KK, Sese J, Ogura A.

Gene. 2011 Sep 1;483(1-2):63-71. doi: 10.1016/j.gene.2011.05.027. Epub 2011 Jun 6.

PMID:
21672613
[PubMed - indexed for MEDLINE]
5.

Scaffolding pre-assembled contigs using SSPACE.

Boetzer M, Henkel CV, Jansen HJ, Butler D, Pirovano W.

Bioinformatics. 2011 Feb 15;27(4):578-9. doi: 10.1093/bioinformatics/btq683. Epub 2010 Dec 12.

PMID:
21149342
[PubMed - indexed for MEDLINE]
Free Article
6.

Transcriptome and proteome analysis of Pinctada margaritifera calcifying mantle and shell: focus on biomineralization.

Joubert C, Piquemal D, Marie B, Manchon L, Pierrat F, Zanella-Cléon I, Cochennec-Laureau N, Gueguen Y, Montagnani C.

BMC Genomics. 2010 Nov 1;11:613. doi: 10.1186/1471-2164-11-613.

PMID:
21040589
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The Amphimedon queenslandica genome and the evolution of animal complexity.

Srivastava M, Simakov O, Chapman J, Fahey B, Gauthier ME, Mitros T, Richards GS, Conaco C, Dacre M, Hellsten U, Larroux C, Putnam NH, Stanke M, Adamska M, Darling A, Degnan SM, Oakley TH, Plachetzki DC, Zhai Y, Adamski M, Calcino A, Cummins SF, Goodstein DM, Harris C, Jackson DJ, Leys SP, Shu S, Woodcroft BJ, Vervoort M, Kosik KS, Manning G, Degnan BM, Rokhsar DS.

Nature. 2010 Aug 5;466(7307):720-6. doi: 10.1038/nature09201.

PMID:
20686567
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The dynamic genome of Hydra.

Chapman JA, Kirkness EF, Simakov O, Hampson SE, Mitros T, Weinmaier T, Rattei T, Balasubramanian PG, Borman J, Busam D, Disbennett K, Pfannkoch C, Sumin N, Sutton GG, Viswanathan LD, Walenz B, Goodstein DM, Hellsten U, Kawashima T, Prochnik SE, Putnam NH, Shu S, Blumberg B, Dana CE, Gee L, Kibler DF, Law L, Lindgens D, Martinez DE, Peng J, Wigge PA, Bertulat B, Guder C, Nakamura Y, Ozbek S, Watanabe H, Khalturin K, Hemmrich G, Franke A, Augustin R, Fraune S, Hayakawa E, Hayakawa S, Hirose M, Hwang JS, Ikeo K, Nishimiya-Fujisawa C, Ogura A, Takahashi T, Steinmetz PR, Zhang X, Aufschnaiter R, Eder MK, Gorny AK, Salvenmoser W, Heimberg AM, Wheeler BM, Peterson KJ, Böttger A, Tischler P, Wolf A, Gojobori T, Remington KA, Strausberg RL, Venter JC, Technau U, Hobmayer B, Bosch TC, Holstein TW, Fujisawa T, Bode HR, David CN, Rokhsar DS, Steele RE.

Nature. 2010 Mar 25;464(7288):592-6. doi: 10.1038/nature08830. Epub 2010 Mar 14.

PMID:
20228792
[PubMed - indexed for MEDLINE]
9.

Mitochondrial phylogenomics of the Bivalvia (Mollusca): searching for the origin and mitogenomic correlates of doubly uniparental inheritance of mtDNA.

Doucet-Beaupré H, Breton S, Chapman EG, Blier PU, Bogan AE, Stewart DT, Hoeh WR.

BMC Evol Biol. 2010 Feb 18;10:50. doi: 10.1186/1471-2148-10-50.

PMID:
20167078
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

An acidic matrix protein, Pif, is a key macromolecule for nacre formation.

Suzuki M, Saruwatari K, Kogure T, Yamamoto Y, Nishimura T, Kato T, Nagasawa H.

Science. 2009 Sep 11;325(5946):1388-90. doi: 10.1126/science.1173793. Epub 2009 Aug 13.

PMID:
19679771
[PubMed - indexed for MEDLINE]
Free Article
11.

Bilaterian phylogeny: a broad sampling of 13 nuclear genes provides a new Lophotrochozoa phylogeny and supports a paraphyletic basal acoelomorpha.

Paps J, Baguñà J, Riutort M.

Mol Biol Evol. 2009 Oct;26(10):2397-406. doi: 10.1093/molbev/msp150. Epub 2009 Jul 14.

PMID:
19602542
[PubMed - indexed for MEDLINE]
Free Article
12.

A novel role for dpp in the shaping of bivalve shells revealed in a conserved molluscan developmental program.

Kin K, Kakoi S, Wada H.

Dev Biol. 2009 May 1;329(1):152-66.

PMID:
19382296
[PubMed - indexed for MEDLINE]
13.

Cloning and characterization of Prisilkin-39, a novel matrix protein serving a dual role in the prismatic layer formation from the oyster Pinctada fucata.

Kong Y, Jing G, Yan Z, Li C, Gong N, Zhu F, Li D, Zhang Y, Zheng G, Wang H, Xie L, Zhang R.

J Biol Chem. 2009 Apr 17;284(16):10841-54. doi: 10.1074/jbc.M808357200. Epub 2009 Feb 19.

PMID:
19233851
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The Trichoplax genome and the nature of placozoans.

Srivastava M, Begovic E, Chapman J, Putnam NH, Hellsten U, Kawashima T, Kuo A, Mitros T, Salamov A, Carpenter ML, Signorovitch AY, Moreno MA, Kamm K, Grimwood J, Schmutz J, Shapiro H, Grigoriev IV, Buss LW, Schierwater B, Dellaporta SL, Rokhsar DS.

Nature. 2008 Aug 21;454(7207):955-60. doi: 10.1038/nature07191.

PMID:
18719581
[PubMed - indexed for MEDLINE]
15.

The amphioxus genome and the evolution of the chordate karyotype.

Putnam NH, Butts T, Ferrier DE, Furlong RF, Hellsten U, Kawashima T, Robinson-Rechavi M, Shoguchi E, Terry A, Yu JK, Benito-Gutiérrez EL, Dubchak I, Garcia-Fernàndez J, Gibson-Brown JJ, Grigoriev IV, Horton AC, de Jong PJ, Jurka J, Kapitonov VV, Kohara Y, Kuroki Y, Lindquist E, Lucas S, Osoegawa K, Pennacchio LA, Salamov AA, Satou Y, Sauka-Spengler T, Schmutz J, Shin-I T, Toyoda A, Bronner-Fraser M, Fujiyama A, Holland LZ, Holland PW, Satoh N, Rokhsar DS.

Nature. 2008 Jun 19;453(7198):1064-71. doi: 10.1038/nature06967.

PMID:
18563158
[PubMed - indexed for MEDLINE]
16.

Broad phylogenomic sampling improves resolution of the animal tree of life.

Dunn CW, Hejnol A, Matus DQ, Pang K, Browne WE, Smith SA, Seaver E, Rouse GW, Obst M, Edgecombe GD, Sørensen MV, Haddock SH, Schmidt-Rhaesa A, Okusu A, Kristensen RM, Wheeler WC, Martindale MQ, Giribet G.

Nature. 2008 Apr 10;452(7188):745-9. doi: 10.1038/nature06614. Epub 2008 Mar 5.

PMID:
18322464
[PubMed - indexed for MEDLINE]
17.

Using native and syntenically mapped cDNA alignments to improve de novo gene finding.

Stanke M, Diekhans M, Baertsch R, Haussler D.

Bioinformatics. 2008 Mar 1;24(5):637-44. doi: 10.1093/bioinformatics/btn013. Epub 2008 Jan 24.

PMID:
18218656
[PubMed - indexed for MEDLINE]
Free Article
18.

ARWEN: a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences.

Laslett D, Canbäck B.

Bioinformatics. 2008 Jan 15;24(2):172-5. Epub 2007 Nov 22.

PMID:
18033792
[PubMed - indexed for MEDLINE]
Free Article
19.

Molluscan shell proteins: primary structure, origin, and evolution.

Marin F, Luquet G, Marie B, Medakovic D.

Curr Top Dev Biol. 2008;80:209-76. Review.

PMID:
17950376
[PubMed - indexed for MEDLINE]
20.

Clustal W and Clustal X version 2.0.

Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG.

Bioinformatics. 2007 Nov 1;23(21):2947-8. Epub 2007 Sep 10.

PMID:
17846036
[PubMed - indexed for MEDLINE]
Free Article

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