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Results: 15

1.

InterPro in 2011: new developments in the family and domain prediction database.

Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S, de Castro E, Coggill P, Corbett M, Das U, Daugherty L, Duquenne L, Finn RD, Fraser M, Gough J, Haft D, Hulo N, Kahn D, Kelly E, Letunic I, Lonsdale D, Lopez R, Madera M, Maslen J, McAnulla C, McDowall J, McMenamin C, Mi H, Mutowo-Muellenet P, Mulder N, Natale D, Orengo C, Pesseat S, Punta M, Quinn AF, Rivoire C, Sangrador-Vegas A, Selengut JD, Sigrist CJ, Scheremetjew M, Tate J, Thimmajanarthanan M, Thomas PD, Wu CH, Yeats C, Yong SY.

Nucleic Acids Res. 2012 Jan;40(Database issue):D306-12. doi: 10.1093/nar/gkr948. Epub 2011 Nov 16.

PMID:
22096229
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

UniProt Knowledgebase: a hub of integrated protein data.

Magrane M, Consortium U.

Database (Oxford). 2011 Mar 29;2011:bar009. doi: 10.1093/database/bar009. Print 2011.

PMID:
21447597
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Identification and characterization of a bacterial glutamic peptidase.

Jensen K, Østergaard PR, Wilting R, Lassen SF.

BMC Biochem. 2010 Dec 1;11:47. doi: 10.1186/1471-2091-11-47.

PMID:
21122090
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Formalization of taxon-based constraints to detect inconsistencies in annotation and ontology development.

Deegan née Clark JI, Dimmer EC, Mungall CJ.

BMC Bioinformatics. 2010 Oct 25;11:530. doi: 10.1186/1471-2105-11-530.

PMID:
20973947
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

A practical, bioinformatic workflow system for large data sets generated by next-generation sequencing.

Cantacessi C, Jex AR, Hall RS, Young ND, Campbell BE, Joachim A, Nolan MJ, Abubucker S, Sternberg PW, Ranganathan S, Mitreva M, Gasser RB.

Nucleic Acids Res. 2010 Sep;38(17):e171. doi: 10.1093/nar/gkq667. Epub 2010 Aug 3.

PMID:
20682560
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium.

Mi H, Dong Q, Muruganujan A, Gaudet P, Lewis S, Thomas PD.

Nucleic Acids Res. 2010 Jan;38(Database issue):D204-10. doi: 10.1093/nar/gkp1019. Epub 2009 Dec 16.

PMID:
20015972
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The Gene Ontology's Reference Genome Project: a unified framework for functional annotation across species.

Reference Genome Group of the Gene Ontology Consortium.

PLoS Comput Biol. 2009 Jul;5(7):e1000431. doi: 10.1371/journal.pcbi.1000431. Epub 2009 Jul 3.

PMID:
19578431
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Blinded by the Light: The Growing Complexity of p53.

Vousden KH, Prives C.

Cell. 2009 May 1;137(3):413-31. doi: 10.1016/j.cell.2009.04.037. Review.

PMID:
19410540
[PubMed - indexed for MEDLINE]
Free Article
9.

The GOA database in 2009--an integrated Gene Ontology Annotation resource.

Barrell D, Dimmer E, Huntley RP, Binns D, O'Donovan C, Apweiler R.

Nucleic Acids Res. 2009 Jan;37(Database issue):D396-403. doi: 10.1093/nar/gkn803. Epub 2008 Oct 27.

PMID:
18957448
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot.

Lima T, Auchincloss AH, Coudert E, Keller G, Michoud K, Rivoire C, Bulliard V, de Castro E, Lachaize C, Baratin D, Phan I, Bougueleret L, Bairoch A.

Nucleic Acids Res. 2009 Jan;37(Database issue):D471-8. doi: 10.1093/nar/gkn661. Epub 2008 Oct 11.

PMID:
18849571
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

The Gene Ontology Annotation (GOA) Project--Application of GO in SWISS-PROT, TrEMBL and InterPro.

Camon E, Barrell D, Brooksbank C, Magrane M, Apweiler R.

Comp Funct Genomics. 2003;4(1):71-4. doi: 10.1002/cfg.235. No abstract available.

PMID:
18629103
[PubMed]
Free PMC Article
12.

TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes.

Selengut JD, Haft DH, Davidsen T, Ganapathy A, Gwinn-Giglio M, Nelson WC, Richter AR, White O.

Nucleic Acids Res. 2007 Jan;35(Database issue):D260-4. Epub 2006 Dec 6.

PMID:
17151080
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

The functional domains in p53 family proteins exhibit both common and distinct properties.

Harms KL, Chen X.

Cell Death Differ. 2006 Jun;13(6):890-7. Review. No abstract available.

PMID:
16543939
[PubMed - indexed for MEDLINE]
Free Article
14.

InterProScan: protein domains identifier.

Quevillon E, Silventoinen V, Pillai S, Harte N, Mulder N, Apweiler R, Lopez R.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W116-20.

PMID:
15980438
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.

Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G.

Nat Genet. 2000 May;25(1):25-9. No abstract available.

PMID:
10802651
[PubMed - indexed for MEDLINE]
Free PMC Article

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