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Results: 1 to 20 of 45

1.

Analytic methods for modeling stochastic regulatory networks.

Walczak AM, Mugler A, Wiggins CH.

Methods Mol Biol. 2012;880:273-322. doi: 10.1007/978-1-61779-833-7_13. Review.

PMID:
23361990
[PubMed - indexed for MEDLINE]
2.

Hierarchical differentiation of myeloid progenitors is encoded in the transcription factor network.

Krumsiek J, Marr C, Schroeder T, Theis FJ.

PLoS One. 2011;6(8):e22649. doi: 10.1371/journal.pone.0022649. Epub 2011 Aug 10.

PMID:
21853041
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Emergence of switch-like behavior in a large family of simple biochemical networks.

Siegal-Gaskins D, Mejia-Guerra MK, Smith GD, Grotewold E.

PLoS Comput Biol. 2011 May;7(5):e1002039. doi: 10.1371/journal.pcbi.1002039. Epub 2011 May 12.

PMID:
21589886
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Dynamic analysis of stochastic transcription cycles.

Harper CV, Finkenst├Ądt B, Woodcock DJ, Friedrichsen S, Semprini S, Ashall L, Spiller DG, Mullins JJ, Rand DA, Davis JR, White MR.

PLoS Biol. 2011 Apr;9(4):e1000607. doi: 10.1371/journal.pbio.1000607. Epub 2011 Apr 12.

PMID:
21532732
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Mathematical modelling of stem cell differentiation: the PU.1-GATA-1 interaction.

Duff C, Smith-Miles K, Lopes L, Tian T.

J Math Biol. 2012 Feb;64(3):449-68. doi: 10.1007/s00285-011-0419-3. Epub 2011 Apr 2.

PMID:
21461760
[PubMed - indexed for MEDLINE]
6.

Functional roles for noise in genetic circuits.

Eldar A, Elowitz MB.

Nature. 2010 Sep 9;467(7312):167-73. doi: 10.1038/nature09326. Review.

PMID:
20829787
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells.

Taniguchi Y, Choi PJ, Li GW, Chen H, Babu M, Hearn J, Emili A, Xie XS.

Science. 2010 Jul 30;329(5991):533-8. doi: 10.1126/science.1188308. Erratum in: Science. 2011 Oct 28;334(6055):453.

PMID:
20671182
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The potential landscape of genetic circuits imposes the arrow of time in stem cell differentiation.

Wang J, Xu L, Wang E, Huang S.

Biophys J. 2010 Jul 7;99(1):29-39. doi: 10.1016/j.bpj.2010.03.058.

PMID:
20655830
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

The role of PU.1 and GATA-1 transcription factors during normal and leukemogenic hematopoiesis.

Burda P, Laslo P, Stopka T.

Leukemia. 2010 Jul;24(7):1249-57. doi: 10.1038/leu.2010.104. Epub 2010 Jun 3. Review.

PMID:
20520638
[PubMed - indexed for MEDLINE]
10.

Modeling reveals bistability and low-pass filtering in the network module determining blood stem cell fate.

Narula J, Smith AM, Gottgens B, Igoshin OA.

PLoS Comput Biol. 2010 May 6;6(5):e1000771. doi: 10.1371/journal.pcbi.1000771.

PMID:
20463872
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Systems biology of stem cell fate and cellular reprogramming.

Macarthur BD, Ma'ayan A, Lemischka IR.

Nat Rev Mol Cell Biol. 2009 Oct;10(10):672-81. doi: 10.1038/nrm2766. Epub 2009 Sep 9. Review.

PMID:
19738627
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Hematopoietic cytokines can instruct lineage choice.

Rieger MA, Hoppe PS, Smejkal BM, Eitelhuber AC, Schroeder T.

Science. 2009 Jul 10;325(5937):217-8. doi: 10.1126/science.1171461.

PMID:
19590005
[PubMed - indexed for MEDLINE]
Free Article
13.

Computational modeling of the hematopoietic erythroid-myeloid switch reveals insights into cooperativity, priming, and irreversibility.

Chickarmane V, Enver T, Peterson C.

PLoS Comput Biol. 2009 Jan;5(1):e1000268. doi: 10.1371/journal.pcbi.1000268. Epub 2009 Jan 23.

PMID:
19165316
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Extinction and resurrection in gene networks.

Schultz D, Walczak AM, Onuchic JN, Wolynes PG.

Proc Natl Acad Sci U S A. 2008 Dec 9;105(49):19165-70. doi: 10.1073/pnas.0810366105. Epub 2008 Nov 25.

PMID:
19033463
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Calculation of switching times in the genetic toggle switch and other bistable systems.

Barzel B, Biham O.

Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Oct;78(4 Pt 1):041919. Epub 2008 Oct 28.

PMID:
18999467
[PubMed - indexed for MEDLINE]
16.

Analytical distributions for stochastic gene expression.

Shahrezaei V, Swain PS.

Proc Natl Acad Sci U S A. 2008 Nov 11;105(45):17256-61. doi: 10.1073/pnas.0803850105. Epub 2008 Nov 6.

PMID:
18988743
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Heterogeneity of embryonic and adult stem cells.

Graf T, Stadtfeld M.

Cell Stem Cell. 2008 Nov 6;3(5):480-3. doi: 10.1016/j.stem.2008.10.007. Review.

PMID:
18983963
[PubMed - indexed for MEDLINE]
Free Article
18.

Potential landscape and flux framework of nonequilibrium networks: robustness, dissipation, and coherence of biochemical oscillations.

Wang J, Xu L, Wang E.

Proc Natl Acad Sci U S A. 2008 Aug 26;105(34):12271-6. doi: 10.1073/pnas.0800579105. Epub 2008 Aug 21.

PMID:
18719111
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Transcriptome-wide noise controls lineage choice in mammalian progenitor cells.

Chang HH, Hemberg M, Barahona M, Ingber DE, Huang S.

Nature. 2008 May 22;453(7194):544-7. doi: 10.1038/nature06965.

PMID:
18497826
[PubMed - indexed for MEDLINE]
20.

Reciprocal activation of GATA-1 and PU.1 marks initial specification of hematopoietic stem cells into myeloerythroid and myelolymphoid lineages.

Arinobu Y, Mizuno S, Chong Y, Shigematsu H, Iino T, Iwasaki H, Graf T, Mayfield R, Chan S, Kastner P, Akashi K.

Cell Stem Cell. 2007 Oct 11;1(4):416-27. doi: 10.1016/j.stem.2007.07.004.

PMID:
18371378
[PubMed - indexed for MEDLINE]
Free Article

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