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Results: 1 to 20 of 51

References for PMC Articles for PubMed (Select 22219718)

1.

Analysis of the human endogenous coregulator complexome.

Malovannaya A, Lanz RB, Jung SY, Bulynko Y, Le NT, Chan DW, Ding C, Shi Y, Yucer N, Krenciute G, Kim BJ, Li C, Chen R, Li W, Wang Y, O'Malley BW, Qin J.

Cell. 2011 May 27;145(5):787-99. doi: 10.1016/j.cell.2011.05.006.

2.

Highly reproducible label free quantitative proteomic analysis of RNA polymerase complexes.

Mosley AL, Sardiu ME, Pattenden SG, Workman JL, Florens L, Washburn MP.

Mol Cell Proteomics. 2011 Feb;10(2):M110.000687. doi: 10.1074/mcp.M110.000687. Epub 2010 Nov 3.

3.

Streamlined analysis schema for high-throughput identification of endogenous protein complexes.

Malovannaya A, Li Y, Bulynko Y, Jung SY, Wang Y, Lanz RB, O'Malley BW, Qin J.

Proc Natl Acad Sci U S A. 2010 Feb 9;107(6):2431-6. doi: 10.1073/pnas.0912599106. Epub 2010 Jan 22. Erratum in: Proc Natl Acad Sci U S A. 2010 Mar 30;107(13):6118.

4.

MINT, the molecular interaction database: 2009 update.

Ceol A, Chatr Aryamontri A, Licata L, Peluso D, Briganti L, Perfetto L, Castagnoli L, Cesareni G.

Nucleic Acids Res. 2010 Jan;38(Database issue):D532-9. doi: 10.1093/nar/gkp983. Epub 2009 Nov 6.

5.

CORUM: the comprehensive resource of mammalian protein complexes--2009.

Ruepp A, Waegele B, Lechner M, Brauner B, Dunger-Kaltenbach I, Fobo G, Frishman G, Montrone C, Mewes HW.

Nucleic Acids Res. 2010 Jan;38(Database issue):D497-501. doi: 10.1093/nar/gkp914. Epub 2009 Nov 1.

6.

Defining the human deubiquitinating enzyme interaction landscape.

Sowa ME, Bennett EJ, Gygi SP, Harper JW.

Cell. 2009 Jul 23;138(2):389-403. doi: 10.1016/j.cell.2009.04.042. Epub 2009 Jul 16.

7.

High-resolution mapping of the protein interaction network for the human transcription machinery and affinity purification of RNA polymerase II-associated complexes.

Cloutier P, Al-Khoury R, Lavallée-Adam M, Faubert D, Jiang H, Poitras C, Bouchard A, Forget D, Blanchette M, Coulombe B.

Methods. 2009 Aug;48(4):381-6. doi: 10.1016/j.ymeth.2009.05.005. Epub 2009 May 18.

8.

Minireview: Evolution of NURSA, the Nuclear Receptor Signaling Atlas.

McKenna NJ, Cooney AJ, DeMayo FJ, Downes M, Glass CK, Lanz RB, Lazar MA, Mangelsdorf DJ, Moore DD, Qin J, Steffen DL, Tsai MJ, Tsai SY, Yu R, Margolis RN, Evans RM, O'Malley BW.

Mol Endocrinol. 2009 Jun;23(6):740-6. doi: 10.1210/me.2009-0135. Epub 2009 May 7. Review. Erratum in: Mol Endocrinol. 2009 Sep;23(9):1522.

9.

Evaluation of clustering algorithms for protein complex and protein interaction network assembly.

Sardiu ME, Florens L, Washburn MP.

J Proteome Res. 2009 Jun;8(6):2944-52. doi: 10.1021/pr900073d.

PMID:
19317493
10.

SNAVI: Desktop application for analysis and visualization of large-scale signaling networks.

Ma'ayan A, Jenkins SL, Webb RL, Berger SI, Purushothaman SP, Abul-Husn NS, Posner JM, Flores T, Iyengar R.

BMC Syst Biol. 2009 Jan 20;3:10. doi: 10.1186/1752-0509-3-10.

11.

Multi-modulation of nuclear receptor coactivators through posttranslational modifications.

Han SJ, Lonard DM, O'Malley BW.

Trends Endocrinol Metab. 2009 Jan;20(1):8-15. doi: 10.1016/j.tem.2008.10.001. Epub 2008 Nov 18. Review.

12.

Human Protein Reference Database--2009 update.

Keshava Prasad TS, Goel R, Kandasamy K, Keerthikumar S, Kumar S, Mathivanan S, Telikicherla D, Raju R, Shafreen B, Venugopal A, Balakrishnan L, Marimuthu A, Banerjee S, Somanathan DS, Sebastian A, Rani S, Ray S, Harrys Kishore CJ, Kanth S, Ahmed M, Kashyap MK, Mohmood R, Ramachandra YL, Krishna V, Rahiman BA, Mohan S, Ranganathan P, Ramabadran S, Chaerkady R, Pandey A.

Nucleic Acids Res. 2009 Jan;37(Database issue):D767-72. doi: 10.1093/nar/gkn892. Epub 2008 Nov 6.

13.

A PP2A phosphatase high density interaction network identifies a novel striatin-interacting phosphatase and kinase complex linked to the cerebral cavernous malformation 3 (CCM3) protein.

Goudreault M, D'Ambrosio LM, Kean MJ, Mullin MJ, Larsen BG, Sanchez A, Chaudhry S, Chen GI, Sicheri F, Nesvizhskii AI, Aebersold R, Raught B, Gingras AC.

Mol Cell Proteomics. 2009 Jan;8(1):157-71. doi: 10.1074/mcp.M800266-MCP200. Epub 2008 Sep 8.

14.

Cracking the coregulator codes.

O'Malley BW, Qin J, Lanz RB.

Curr Opin Cell Biol. 2008 Jun;20(3):310-5. doi: 10.1016/j.ceb.2008.04.005. Epub 2008 May 20. Review.

15.

From pull-down data to protein interaction networks and complexes with biological relevance.

Zhang B, Park BH, Karpinets T, Samatova NF.

Bioinformatics. 2008 Apr 1;24(7):979-86. doi: 10.1093/bioinformatics/btn036. Epub 2008 Feb 26.

16.

Probabilistic assembly of human protein interaction networks from label-free quantitative proteomics.

Sardiu ME, Cai Y, Jin J, Swanson SK, Conaway RC, Conaway JW, Florens L, Washburn MP.

Proc Natl Acad Sci U S A. 2008 Feb 5;105(5):1454-9. doi: 10.1073/pnas.0706983105. Epub 2008 Jan 24.

17.

The BioGRID Interaction Database: 2008 update.

Breitkreutz BJ, Stark C, Reguly T, Boucher L, Breitkreutz A, Livstone M, Oughtred R, Lackner DH, Bähler J, Wood V, Dolinski K, Tyers M.

Nucleic Acids Res. 2008 Jan;36(Database issue):D637-40. Epub 2007 Nov 13.

18.
19.

DOMINE: a database of protein domain interactions.

Raghavachari B, Tasneem A, Przytycka TM, Jothi R.

Nucleic Acids Res. 2008 Jan;36(Database issue):D656-61. Epub 2007 Oct 2.

20.

Nuclear receptor coregulators: judges, juries, and executioners of cellular regulation.

Lonard DM, O'malley BW.

Mol Cell. 2007 Sep 7;27(5):691-700. Review.

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