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Results: 1 to 20 of 37

1.

Mapping copy number variation by population-scale genome sequencing.

Mills RE, Walter K, Stewart C, Handsaker RE, Chen K, Alkan C, Abyzov A, Yoon SC, Ye K, Cheetham RK, Chinwalla A, Conrad DF, Fu Y, Grubert F, Hajirasouliha I, Hormozdiari F, Iakoucheva LM, Iqbal Z, Kang S, Kidd JM, Konkel MK, Korn J, Khurana E, Kural D, Lam HY, Leng J, Li R, Li Y, Lin CY, Luo R, Mu XJ, Nemesh J, Peckham HE, Rausch T, Scally A, Shi X, Stromberg MP, Stütz AM, Urban AE, Walker JA, Wu J, Zhang Y, Zhang ZD, Batzer MA, Ding L, Marth GT, McVean G, Sebat J, Snyder M, Wang J, Ye K, Eichler EE, Gerstein MB, Hurles ME, Lee C, McCarroll SA, Korbel JO; 1000 Genomes Project.

Nature. 2011 Feb 3;470(7332):59-65. doi: 10.1038/nature09708.

PMID:
21293372
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Limitations of next-generation genome sequence assembly.

Alkan C, Sajjadian S, Eichler EE.

Nat Methods. 2011 Jan;8(1):61-5. doi: 10.1038/nmeth.1527. Epub 2010 Nov 21.

PMID:
21102452
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Population admixture, biological invasions and the balance between local adaptation and inbreeding depression.

Verhoeven KJ, Macel M, Wolfe LM, Biere A.

Proc Biol Sci. 2011 Jan 7;278(1702):2-8. doi: 10.1098/rspb.2010.1272. Epub 2010 Aug 4. Review.

PMID:
20685700
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Large, rare chromosomal deletions associated with severe early-onset obesity.

Bochukova EG, Huang N, Keogh J, Henning E, Purmann C, Blaszczyk K, Saeed S, Hamilton-Shield J, Clayton-Smith J, O'Rahilly S, Hurles ME, Farooqi IS.

Nature. 2010 Feb 4;463(7281):666-70. doi: 10.1038/nature08689. Epub 2009 Dec 6.

PMID:
19966786
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Origins and functional impact of copy number variation in the human genome.

Conrad DF, Pinto D, Redon R, Feuk L, Gokcumen O, Zhang Y, Aerts J, Andrews TD, Barnes C, Campbell P, Fitzgerald T, Hu M, Ihm CH, Kristiansson K, Macarthur DG, Macdonald JR, Onyiah I, Pang AW, Robson S, Stirrups K, Valsesia A, Walter K, Wei J; Wellcome Trust Case Control Consortium, Tyler-Smith C, Carter NP, Lee C, Scherer SW, Hurles ME.

Nature. 2010 Apr 1;464(7289):704-12. doi: 10.1038/nature08516. Epub 2009 Oct 7.

PMID:
19812545
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Autism genome-wide copy number variation reveals ubiquitin and neuronal genes.

Glessner JT, Wang K, Cai G, Korvatska O, Kim CE, Wood S, Zhang H, Estes A, Brune CW, Bradfield JP, Imielinski M, Frackelton EC, Reichert J, Crawford EL, Munson J, Sleiman PM, Chiavacci R, Annaiah K, Thomas K, Hou C, Glaberson W, Flory J, Otieno F, Garris M, Soorya L, Klei L, Piven J, Meyer KJ, Anagnostou E, Sakurai T, Game RM, Rudd DS, Zurawiecki D, McDougle CJ, Davis LK, Miller J, Posey DJ, Michaels S, Kolevzon A, Silverman JM, Bernier R, Levy SE, Schultz RT, Dawson G, Owley T, McMahon WM, Wassink TH, Sweeney JA, Nurnberger JI, Coon H, Sutcliffe JS, Minshew NJ, Grant SF, Bucan M, Cook EH, Buxbaum JD, Devlin B, Schellenberg GD, Hakonarson H.

Nature. 2009 May 28;459(7246):569-73. doi: 10.1038/nature07953. Epub 2009 Apr 28.

PMID:
19404257
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Genetic variation in strains of zebrafish (Danio rerio) and the implications for ecotoxicology studies.

Coe TS, Hamilton PB, Griffiths AM, Hodgson DJ, Wahab MA, Tyler CR.

Ecotoxicology. 2009 Jan;18(1):144-50. doi: 10.1007/s10646-008-0267-0. Epub 2008 Sep 16.

PMID:
18795247
[PubMed - indexed for MEDLINE]
8.

Excessive genomic DNA copy number variation in the Li-Fraumeni cancer predisposition syndrome.

Shlien A, Tabori U, Marshall CR, Pienkowska M, Feuk L, Novokmet A, Nanda S, Druker H, Scherer SW, Malkin D.

Proc Natl Acad Sci U S A. 2008 Aug 12;105(32):11264-9. doi: 10.1073/pnas.0802970105. Epub 2008 Aug 6.

PMID:
18685109
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Natural selection shapes genome-wide patterns of copy-number polymorphism in Drosophila melanogaster.

Emerson JJ, Cardoso-Moreira M, Borevitz JO, Long M.

Science. 2008 Jun 20;320(5883):1629-31. doi: 10.1126/science.1158078. Epub 2008 Jun 5.

PMID:
18535209
[PubMed - indexed for MEDLINE]
Free Article
10.

Mapping and sequencing of structural variation from eight human genomes.

Kidd JM, Cooper GM, Donahue WF, Hayden HS, Sampas N, Graves T, Hansen N, Teague B, Alkan C, Antonacci F, Haugen E, Zerr T, Yamada NA, Tsang P, Newman TL, Tüzün E, Cheng Z, Ebling HM, Tusneem N, David R, Gillett W, Phelps KA, Weaver M, Saranga D, Brand A, Tao W, Gustafson E, McKernan K, Chen L, Malig M, Smith JD, Korn JM, McCarroll SA, Altshuler DA, Peiffer DA, Dorschner M, Stamatoyannopoulos J, Schwartz D, Nickerson DA, Mullikin JC, Wilson RK, Bruhn L, Olson MV, Kaul R, Smith DR, Eichler EE.

Nature. 2008 May 1;453(7191):56-64. doi: 10.1038/nature06862.

PMID:
18451855
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Distribution and functional impact of DNA copy number variation in the rat.

Guryev V, Saar K, Adamovic T, Verheul M, van Heesch SA, Cook S, Pravenec M, Aitman T, Jacob H, Shull JD, Hubner N, Cuppen E.

Nat Genet. 2008 May;40(5):538-45. doi: 10.1038/ng.141.

PMID:
18443591
[PubMed - indexed for MEDLINE]
12.

Analysis of copy number variation in the rhesus macaque genome identifies candidate loci for evolutionary and human disease studies.

Lee AS, Gutiérrez-Arcelus M, Perry GH, Vallender EJ, Johnson WE, Miller GM, Korbel JO, Lee C.

Hum Mol Genet. 2008 Apr 15;17(8):1127-36. doi: 10.1093/hmg/ddn002. Epub 2008 Jan 7.

PMID:
18180252
[PubMed - indexed for MEDLINE]
Free Article
13.

Large-scale appearance of ultraconserved elements in tetrapod genomes and slowdown of the molecular clock.

Stephen S, Pheasant M, Makunin IV, Mattick JS.

Mol Biol Evol. 2008 Feb;25(2):402-8. Epub 2007 Dec 3.

PMID:
18056681
[PubMed - indexed for MEDLINE]
Free Article
14.

Zebrafish in the wild: a review of natural history and new notes from the field.

Engeszer RE, Patterson LB, Rao AA, Parichy DM.

Zebrafish. 2007 Spring;4(1):21-40. Review.

PMID:
18041940
[PubMed - indexed for MEDLINE]
15.

Recurrent DNA copy number variation in the laboratory mouse.

Egan CM, Sridhar S, Wigler M, Hall IM.

Nat Genet. 2007 Nov;39(11):1384-9. Epub 2007 Oct 28.

PMID:
17965714
[PubMed - indexed for MEDLINE]
16.

Mannose binding lectin (MBL) copy number polymorphism in Zebrafish (D. rerio) and identification of haplotypes resistant to L. anguillarum.

Jackson AN, McLure CA, Dawkins RL, Keating PJ.

Immunogenetics. 2007 Nov;59(11):861-72. Epub 2007 Oct 18.

PMID:
17943278
[PubMed - indexed for MEDLINE]
17.

Population genomics of human gene expression.

Stranger BE, Nica AC, Forrest MS, Dimas A, Bird CP, Beazley C, Ingle CE, Dunning M, Flicek P, Koller D, Montgomery S, Tavaré S, Deloukas P, Dermitzakis ET.

Nat Genet. 2007 Oct;39(10):1217-24. Epub 2007 Sep 16.

PMID:
17873874
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Copy-number variation and association studies of human disease.

McCarroll SA, Altshuler DM.

Nat Genet. 2007 Jul;39(7 Suppl):S37-42. Review.

PMID:
17597780
[PubMed - indexed for MEDLINE]
19.

Definition of the zebrafish genome using flow cytometry and cytogenetic mapping.

Freeman JL, Adeniyi A, Banerjee R, Dallaire S, Maguire SF, Chi J, Ng BL, Zepeda C, Scott CE, Humphray S, Rogers J, Zhou Y, Zon LI, Carter NP, Yang F, Lee C.

BMC Genomics. 2007 Jun 27;8:195.

PMID:
17597531
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Animal models of human disease: zebrafish swim into view.

Lieschke GJ, Currie PD.

Nat Rev Genet. 2007 May;8(5):353-67. Review.

PMID:
17440532
[PubMed - indexed for MEDLINE]

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