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Results: 1 to 20 of 28

1.

Archaeosortases and exosortases are widely distributed systems linking membrane transit with posttranslational modification.

Haft DH, Payne SH, Selengut JD.

J Bacteriol. 2012 Jan;194(1):36-48. doi: 10.1128/JB.06026-11. Epub 2011 Oct 28.

PMID:
22037399
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Por secretion system-dependent secretion and glycosylation of Porphyromonas gingivalis hemin-binding protein 35.

Shoji M, Sato K, Yukitake H, Kondo Y, Narita Y, Kadowaki T, Naito M, Nakayama K.

PLoS One. 2011;6(6):e21372. doi: 10.1371/journal.pone.0021372. Epub 2011 Jun 22.

PMID:
21731719
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Rhomboid family pseudoproteases use the ER quality control machinery to regulate intercellular signaling.

Zettl M, Adrain C, Strisovsky K, Lastun V, Freeman M.

Cell. 2011 Apr 1;145(1):79-91. doi: 10.1016/j.cell.2011.02.047.

PMID:
21439629
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

The mitochondrial intramembrane protease PARL cleaves human Pink1 to regulate Pink1 trafficking.

Meissner C, Lorenz H, Weihofen A, Selkoe DJ, Lemberg MK.

J Neurochem. 2011 Jun;117(5):856-67. doi: 10.1111/j.1471-4159.2011.07253.x. Epub 2011 Apr 13.

PMID:
21426348
[PubMed - indexed for MEDLINE]
5.

A proteogenomic update to Yersinia: enhancing genome annotation.

Payne SH, Huang ST, Pieper R.

BMC Genomics. 2010 Aug 5;11:460. doi: 10.1186/1471-2164-11-460.

PMID:
20687929
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

A new generation of homology search tools based on probabilistic inference.

Eddy SR.

Genome Inform. 2009 Oct;23(1):205-11.

PMID:
20180275
[PubMed - indexed for MEDLINE]
7.

Sites Inferred by Metabolic Background Assertion Labeling (SIMBAL): adapting the Partial Phylogenetic Profiling algorithm to scan sequences for signatures that predict protein function.

Selengut JD, Rusch DB, Haft DH.

BMC Bioinformatics. 2010 Jan 26;11:52. doi: 10.1186/1471-2105-11-52.

PMID:
20102603
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Taking the plunge: integrating structural, enzymatic and computational insights into a unified model for membrane-immersed rhomboid proteolysis.

Urban S.

Biochem J. 2010 Jan 15;425(3):501-12. doi: 10.1042/BJ20090861. Review.

PMID:
20070259
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Sequence-specific intramembrane proteolysis: identification of a recognition motif in rhomboid substrates.

Strisovsky K, Sharpe HJ, Freeman M.

Mol Cell. 2009 Dec 25;36(6):1048-59. doi: 10.1016/j.molcel.2009.11.006.

PMID:
20064469
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Rhomboid proteases and their biological functions.

Freeman M.

Annu Rev Genet. 2008;42:191-210. doi: 10.1146/annurev.genet.42.110807.091628. Review.

PMID:
18605900
[PubMed - indexed for MEDLINE]
11.

Comparative bacterial proteomics: analysis of the core genome concept.

Callister SJ, McCue LA, Turse JE, Monroe ME, Auberry KJ, Smith RD, Adkins JN, Lipton MS.

PLoS One. 2008 Feb 6;3(2):e1542. doi: 10.1371/journal.pone.0001542.

PMID:
18253490
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The Pfam protein families database.

Finn RD, Tate J, Mistry J, Coggill PC, Sammut SJ, Hotz HR, Ceric G, Forslund K, Eddy SR, Sonnhammer EL, Bateman A.

Nucleic Acids Res. 2008 Jan;36(Database issue):D281-8. Epub 2007 Nov 26.

PMID:
18039703
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Rhomboid protease AarA mediates quorum-sensing in Providencia stuartii by activating TatA of the twin-arginine translocase.

Stevenson LG, Strisovsky K, Clemmer KM, Bhatt S, Freeman M, Rather PN.

Proc Natl Acad Sci U S A. 2007 Jan 16;104(3):1003-8. Epub 2007 Jan 10.

PMID:
17215357
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes.

Selengut JD, Haft DH, Davidsen T, Ganapathy A, Gwinn-Giglio M, Nelson WC, Richter AR, White O.

Nucleic Acids Res. 2007 Jan;35(Database issue):D260-4. Epub 2006 Dec 6.

PMID:
17151080
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Rhomboid proteins: conserved membrane proteases with divergent biological functions.

Urban S.

Genes Dev. 2006 Nov 15;20(22):3054-68. Review.

PMID:
17114579
[PubMed - indexed for MEDLINE]
Free Article
16.

Structural analysis of a rhomboid family intramembrane protease reveals a gating mechanism for substrate entry.

Wu Z, Yan N, Feng L, Oberstein A, Yan H, Baker RP, Gu L, Jeffrey PD, Urban S, Shi Y.

Nat Struct Mol Biol. 2006 Dec;13(12):1084-91. Epub 2006 Nov 10.

PMID:
17099694
[PubMed - indexed for MEDLINE]
17.
18.

Bacillus anthracis sortase A (SrtA) anchors LPXTG motif-containing surface proteins to the cell wall envelope.

Gaspar AH, Marraffini LA, Glass EM, Debord KL, Ton-That H, Schneewind O.

J Bacteriol. 2005 Jul;187(13):4646-55.

PMID:
15968076
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

A spatially localized rhomboid protease cleaves cell surface adhesins essential for invasion by Toxoplasma.

Brossier F, Jewett TJ, Sibley LD, Urban S.

Proc Natl Acad Sci U S A. 2005 Mar 15;102(11):4146-51. Epub 2005 Mar 7.

PMID:
15753289
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Improved prediction of signal peptides: SignalP 3.0.

Bendtsen JD, Nielsen H, von Heijne G, Brunak S.

J Mol Biol. 2004 Jul 16;340(4):783-95.

PMID:
15223320
[PubMed - indexed for MEDLINE]

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