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Results: 1 to 20 of 44

References for PMC Articles for PubMed (Select 22091783)

1.

PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip.

DeAngelis KM, Wu CH, Beller HR, Brodie EL, Chakraborty R, DeSantis TZ, Fortney JL, Hazen TC, Osman SR, Singer ME, Tom LM, Andersen GL.

Appl Environ Microbiol. 2011 Sep;77(18):6313-22. doi: 10.1128/AEM.05262-11. Epub 2011 Jul 15.

2.

Comparative phylogenetic microarray analysis of microbial communities in TCE-contaminated soils.

Nemir A, David MM, Perrussel R, Sapkota A, Simonet P, Monier JM, Vogel TM.

Chemosphere. 2010 Jul;80(5):600-7. doi: 10.1016/j.chemosphere.2010.03.036. Epub 2010 May 4.

PMID:
20444493
3.

Exploiting the ecogenomics toolbox for environmental diagnostics of organohalide-respiring bacteria.

Maphosa F, de Vos WM, Smidt H.

Trends Biotechnol. 2010 Jun;28(6):308-16. doi: 10.1016/j.tibtech.2010.03.005. Epub 2010 Apr 29. Review.

PMID:
20434786
4.

Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides.

McMurdie PJ, Behrens SF, Müller JA, Göke J, Ritalahti KM, Wagner R, Goltsman E, Lapidus A, Holmes S, Löffler FE, Spormann AM.

PLoS Genet. 2009 Nov;5(11):e1000714. doi: 10.1371/journal.pgen.1000714. Epub 2009 Nov 6.

5.

Geochemistry and microbial diversity of a trichloroethene-contaminated Superfund site undergoing intrinsic in situ reductive dechlorination.

Lowe M, Madsen EL, Schindler K, Smith C, Emrich S, Robb F, Halden RU.

FEMS Microbiol Ecol. 2002 May 1;40(2):123-34. doi: 10.1111/j.1574-6941.2002.tb00944.x.

6.

Isolation and characterization of "Dehalococcoides" sp. strain MB, which dechlorinates tetrachloroethene to trans-1,2-dichloroethene.

Cheng D, He J.

Appl Environ Microbiol. 2009 Sep;75(18):5910-8. doi: 10.1128/AEM.00767-09. Epub 2009 Jul 24.

7.

Selective progressive response of soil microbial community to wild oat roots.

DeAngelis KM, Brodie EL, DeSantis TZ, Andersen GL, Lindow SE, Firestone MK.

ISME J. 2009 Feb;3(2):168-78. doi: 10.1038/ismej.2008.103. Epub 2008 Nov 13.

PMID:
19005498
8.
9.

A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells.

Wrighton KC, Agbo P, Warnecke F, Weber KA, Brodie EL, DeSantis TZ, Hugenholtz P, Andersen GL, Coates JD.

ISME J. 2008 Nov;2(11):1146-56. doi: 10.1038/ismej.2008.48. Epub 2008 Sep 4.

PMID:
18769460
10.

Quantifying genes and transcripts to assess the in situ physiology of "Dehalococcoides" spp. in a trichloroethene-contaminated groundwater site.

Lee PK, Macbeth TW, Sorenson KS Jr, Deeb RA, Alvarez-Cohen L.

Appl Environ Microbiol. 2008 May;74(9):2728-39. doi: 10.1128/AEM.02199-07. Epub 2008 Mar 7.

11.

Comparative analysis of three tetrachloroethene to ethene halorespiring consortia suggests functional redundancy.

Daprato RC, Löffler FE, Hughes JB.

Environ Sci Technol. 2007 Apr 1;41(7):2261-9.

PMID:
17438773
12.

High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment.

DeSantis TZ, Brodie EL, Moberg JP, Zubieta IX, Piceno YM, Andersen GL.

Microb Ecol. 2007 Apr;53(3):371-83. Epub 2007 Mar 2.

PMID:
17334858
13.

Chlorinated solvents in groundwater of the United States.

Moran MJ, Zogorski JS, Squillace PJ.

Environ Sci Technol. 2007 Jan 1;41(1):74-81.

PMID:
17265929
14.

Urban aerosols harbor diverse and dynamic bacterial populations.

Brodie EL, DeSantis TZ, Parker JP, Zubietta IX, Piceno YM, Andersen GL.

Proc Natl Acad Sci U S A. 2007 Jan 2;104(1):299-304. Epub 2006 Dec 20.

15.

Microbial composition of chlorinated ethene-degrading cultures dominated by Dehalococcoides.

Duhamel M, Edwards EA.

FEMS Microbiol Ecol. 2006 Dec;58(3):538-49.

16.
17.

Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation.

Brodie EL, Desantis TZ, Joyner DC, Baek SM, Larsen JT, Andersen GL, Hazen TC, Richardson PM, Herman DJ, Tokunaga TK, Wan JM, Firestone MK.

Appl Environ Microbiol. 2006 Sep;72(9):6288-98.

18.

Reductive dehalogenase gene expression as a biomarker for physiological activity of Dehalococcoides spp.

Lee PK, Johnson DR, Holmes VF, He J, Alvarez-Cohen L.

Appl Environ Microbiol. 2006 Sep;72(9):6161-8.

19.

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB.

DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, Huber T, Dalevi D, Hu P, Andersen GL.

Appl Environ Microbiol. 2006 Jul;72(7):5069-72.

20.

Harnessing microbial activities for environmental cleanup.

Löffler FE, Edwards EA.

Curr Opin Biotechnol. 2006 Jun;17(3):274-84. Epub 2006 May 11. Review.

PMID:
16697178
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