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Items: 1 to 20 of 150

1.

tRNA genes protect a reporter gene from epigenetic silencing in mouse cells.

Ebersole T, Kim JH, Samoshkin A, Kouprina N, Pavlicek A, White RJ, Larionov V.

Cell Cycle. 2011 Aug 15;10(16):2779-91. Epub 2011 Aug 15.

2.

Nucleoporin mediated nuclear positioning and silencing of HMR.

Ruben GJ, Kirkland JG, MacDonough T, Chen M, Dubey RN, Gartenberg MR, Kamakaka RT.

PLoS One. 2011;6(7):e21923. doi: 10.1371/journal.pone.0021923. Epub 2011 Jul 19.

3.

Mapping and analysis of chromatin state dynamics in nine human cell types.

Ernst J, Kheradpour P, Mikkelsen TS, Shoresh N, Ward LD, Epstein CB, Zhang X, Wang L, Issner R, Coyne M, Ku M, Durham T, Kellis M, Bernstein BE.

Nature. 2011 May 5;473(7345):43-9. doi: 10.1038/nature09906. Epub 2011 Mar 23.

4.

Dioxin receptor and SLUG transcription factors regulate the insulator activity of B1 SINE retrotransposons via an RNA polymerase switch.

Román AC, González-Rico FJ, Moltó E, Hernando H, Neto A, Vicente-Garcia C, Ballestar E, Gómez-Skarmeta JL, Vavrova-Anderson J, White RJ, Montoliu L, Fernández-Salguero PM.

Genome Res. 2011 Mar;21(3):422-32. doi: 10.1101/gr.111203.110. Epub 2011 Feb 3.

5.

Functional and mechanistic diversity of distal transcription enhancers.

Bulger M, Groudine M.

Cell. 2011 Feb 4;144(3):327-39. doi: 10.1016/j.cell.2011.01.024. Review. Erratum in: Cell. 2011 Mar 4;144(5):825.

6.

Memories of lost enhancers.

Sen R, Grosschedl R.

Genes Dev. 2010 May 15;24(10):973-9. doi: 10.1101/gad.1930610.

7.

Condensin and cohesin complexity: the expanding repertoire of functions.

Wood AJ, Severson AF, Meyer BJ.

Nat Rev Genet. 2010 Jun;11(6):391-404. doi: 10.1038/nrg2794. Epub 2010 May 5. Review.

8.

Insulators and promoters: closer than we think.

Raab JR, Kamakaka RT.

Nat Rev Genet. 2010 Jun;11(6):439-46. doi: 10.1038/nrg2765. Epub 2010 May 5.

9.

A three-dimensional model of the yeast genome.

Duan Z, Andronescu M, Schutz K, McIlwain S, Kim YJ, Lee C, Shendure J, Fields S, Blau CA, Noble WS.

Nature. 2010 May 20;465(7296):363-7. doi: 10.1038/nature08973. Epub 2010 May 2.

10.

Genomic organization of eukaryotic tRNAs.

Bermudez-Santana C, Attolini CS, Kirsten T, Engelhardt J, Prohaska SJ, Steigele S, Stadler PF.

BMC Genomics. 2010 Apr 28;11:270. doi: 10.1186/1471-2164-11-270.

11.

Genomic binding profiles of functionally distinct RNA polymerase III transcription complexes in human cells.

Moqtaderi Z, Wang J, Raha D, White RJ, Snyder M, Weng Z, Struhl K.

Nat Struct Mol Biol. 2010 May;17(5):635-40. doi: 10.1038/nsmb.1794. Epub 2010 Apr 25.

12.

Human RNA polymerase III transcriptomes and relationships to Pol II promoter chromatin and enhancer-binding factors.

Oler AJ, Alla RK, Roberts DN, Wong A, Hollenhorst PC, Chandler KJ, Cassiday PA, Nelson CA, Hagedorn CH, Graves BJ, Cairns BR.

Nat Struct Mol Biol. 2010 May;17(5):620-8. doi: 10.1038/nsmb.1801. Epub 2010 Apr 25.

13.

Pol II and its associated epigenetic marks are present at Pol III-transcribed noncoding RNA genes.

Barski A, Chepelev I, Liko D, Cuddapah S, Fleming AB, Birch J, Cui K, White RJ, Zhao K.

Nat Struct Mol Biol. 2010 May;17(5):629-34. doi: 10.1038/nsmb.1806. Epub 2010 Apr 25.

14.

Cohesinopathies, gene expression, and chromatin organization.

Bose T, Gerton JL.

J Cell Biol. 2010 Apr 19;189(2):201-10. doi: 10.1083/jcb.200912129. Review.

15.

The transcriptional interactome: gene expression in 3D.

Schoenfelder S, Clay I, Fraser P.

Curr Opin Genet Dev. 2010 Apr;20(2):127-33. doi: 10.1016/j.gde.2010.02.002. Epub 2010 Mar 6. Review.

PMID:
20211559
16.

Close association of RNA polymerase II and many transcription factors with Pol III genes.

Raha D, Wang Z, Moqtaderi Z, Wu L, Zhong G, Gerstein M, Struhl K, Snyder M.

Proc Natl Acad Sci U S A. 2010 Feb 23;107(8):3639-44. doi: 10.1073/pnas.0911315106. Epub 2010 Feb 5.

17.

VEZF1 elements mediate protection from DNA methylation.

Dickson J, Gowher H, Strogantsev R, Gaszner M, Hair A, Felsenfeld G, West AG.

PLoS Genet. 2010 Jan;6(1):e1000804. doi: 10.1371/journal.pgen.1000804. Epub 2010 Jan 8.

18.

Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells.

Schoenfelder S, Sexton T, Chakalova L, Cope NF, Horton A, Andrews S, Kurukuti S, Mitchell JA, Umlauf D, Dimitrova DS, Eskiw CH, Luo Y, Wei CL, Ruan Y, Bieker JJ, Fraser P.

Nat Genet. 2010 Jan;42(1):53-61. doi: 10.1038/ng.496. Epub 2009 Dec 13.

19.

Centromeric localization of dispersed Pol III genes in fission yeast.

Iwasaki O, Tanaka A, Tanizawa H, Grewal SI, Noma K.

Mol Biol Cell. 2010 Jan 15;21(2):254-65. doi: 10.1091/mbc.E09-09-0790. Epub 2009 Nov 12.

20.

Homology-based annotation of non-coding RNAs in the genomes of Schistosoma mansoni and Schistosoma japonicum.

Copeland CS, Marz M, Rose D, Hertel J, Brindley PJ, Santana CB, Kehr S, Attolini CS, Stadler PF.

BMC Genomics. 2009 Oct 8;10:464. doi: 10.1186/1471-2164-10-464.

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