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Results: 1 to 20 of 74

1.

Bacteriophages and their genomes.

Hatfull GF, Hendrix RW.

Curr Opin Virol. 2011 Oct;1(4):298-303. doi: 10.1016/j.coviro.2011.06.009. Review.

PMID:
22034588
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Phamerator: a bioinformatic tool for comparative bacteriophage genomics.

Cresawn SG, Bogel M, Day N, Jacobs-Sera D, Hendrix RW, Hatfull GF.

BMC Bioinformatics. 2011 Oct 12;12:395. doi: 10.1186/1471-2105-12-395.

PMID:
21991981
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Expanding the diversity of mycobacteriophages: insights into genome architecture and evolution.

Pope WH, Jacobs-Sera D, Russell DA, Peebles CL, Al-Atrache Z, Alcoser TA, Alexander LM, Alfano MB, Alford ST, Amy NE, Anderson MD, Anderson AG, Ang AA, Ares M Jr, Barber AJ, Barker LP, Barrett JM, Barshop WD, Bauerle CM, Bayles IM, Belfield KL, Best AA, Borjon A Jr, Bowman CA, Boyer CA, Bradley KW, Bradley VA, Broadway LN, Budwal K, Busby KN, Campbell IW, Campbell AM, Carey A, Caruso SM, Chew RD, Cockburn CL, Cohen LB, Corajod JM, Cresawn SG, Davis KR, Deng L, Denver DR, Dixon BR, Ekram S, Elgin SC, Engelsen AE, English BE, Erb ML, Estrada C, Filliger LZ, Findley AM, Forbes L, Forsyth MH, Fox TM, Fritz MJ, Garcia R, George ZD, Georges AE, Gissendanner CR, Goff S, Goldstein R, Gordon KC, Green RD, Guerra SL, Guiney-Olsen KR, Guiza BG, Haghighat L, Hagopian GV, Harmon CJ, Harmson JS, Hartzog GA, Harvey SE, He S, He KJ, Healy KE, Higinbotham ER, Hildebrandt EN, Ho JH, Hogan GM, Hohenstein VG, Holz NA, Huang VJ, Hufford EL, Hynes PM, Jackson AS, Jansen EC, Jarvik J, Jasinto PG, Jordan TC, Kasza T, Katelyn MA, Kelsey JS, Kerrigan LA, Khaw D, Kim J, Knutter JZ, Ko CC, Larkin GV, Laroche JR, Latif A, Leuba KD, Leuba SI, Lewis LO, Loesser-Casey KE, Long CA, Lopez AJ, Lowery N, Lu TQ, Mac V, Masters IR, McCloud JJ, McDonough MJ, Medenbach AJ, Menon A, Miller R, Morgan BK, Ng PC, Nguyen E, Nguyen KT, Nguyen ET, Nicholson KM, Parnell LA, Peirce CE, Perz AM, Peterson LJ, Pferdehirt RE, Philip SV, Pogliano K, Pogliano J, Polley T, Puopolo EJ, Rabinowitz HS, Resiss MJ, Rhyan CN, Robinson YM, Rodriguez LL, Rose AC, Rubin JD, Ruby JA, Saha MS, Sandoz JW, Savitskaya J, Schipper DJ, Schnitzler CE, Schott AR, Segal JB, Shaffer CD, Sheldon KE, Shepard EM, Shepardson JW, Shroff MK, Simmons JM, Simms EF, Simpson BM, Sinclair KM, Sjoholm RL, Slette IJ, Spaulding BC, Straub CL, Stukey J, Sughrue T, Tang TY, Tatyana LM, Taylor SB, Taylor BJ, Temple LM, Thompson JV, Tokarz MP, Trapani SE, Troum AP, Tsay J, Tubbs AT, Walton JM, Wang DH, Wang H, Warner JR, Weisser EG, Wendler SC, Weston-Hafer KA, Whelan HM, Williamson KE, Willis AN, Wirtshafter HS, Wong TW, Wu P, Yang Yj, Yee BC, Zaidins DA, Zhang B, ZĂșniga MY, Hendrix RW, Hatfull GF.

PLoS One. 2011 Jan 27;6(1):e16329. doi: 10.1371/journal.pone.0016329.

PMID:
21298013
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

RtcB is the RNA ligase component of an Escherichia coli RNA repair operon.

Tanaka N, Shuman S.

J Biol Chem. 2011 Mar 11;286(10):7727-31. doi: 10.1074/jbc.C111.219022. Epub 2011 Jan 11.

PMID:
21224389
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Cloning and expression of a mureinolytic enzyme from the mycobacteriophage TM4.

Henry M, Begley M, Neve H, Maher F, Ross RP, McAuliffe O, Coffey A, O'Mahony JM.

FEMS Microbiol Lett. 2010 Oct;311(2):126-32. doi: 10.1111/j.1574-6968.2010.02080.x. Epub 2010 Aug 19.

PMID:
20727013
[PubMed - indexed for MEDLINE]
6.

Taking phage integration to the next level as a genetic tool for mycobacteria.

Huff J, Czyz A, Landick R, Niederweis M.

Gene. 2010 Nov 15;468(1-2):8-19. doi: 10.1016/j.gene.2010.07.012. Epub 2010 Aug 6.

PMID:
20692326
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Insights into the function of the WhiB-like protein of mycobacteriophage TM4--a transcriptional inhibitor of WhiB2.

Rybniker J, Nowag A, van Gumpel E, Nissen N, Robinson N, Plum G, Hartmann P.

Mol Microbiol. 2010 Aug;77(3):642-57. doi: 10.1111/j.1365-2958.2010.07235.x. Epub 2010 Jun 9.

PMID:
20545868
[PubMed - indexed for MEDLINE]
8.

Mycobacteriophages: genes and genomes.

Hatfull GF.

Annu Rev Microbiol. 2010;64:331-56. doi: 10.1146/annurev.micro.112408.134233. Review.

PMID:
20528690
[PubMed - indexed for MEDLINE]
9.

Bacteriophage resistance mechanisms.

Labrie SJ, Samson JE, Moineau S.

Nat Rev Microbiol. 2010 May;8(5):317-27. doi: 10.1038/nrmicro2315. Epub 2010 Mar 29. Review.

PMID:
20348932
[PubMed - indexed for MEDLINE]
10.

Comparative genomic analysis of 60 Mycobacteriophage genomes: genome clustering, gene acquisition, and gene size.

Hatfull GF, Jacobs-Sera D, Lawrence JG, Pope WH, Russell DA, Ko CC, Weber RJ, Patel MC, Germane KL, Edgar RH, Hoyte NN, Bowman CA, Tantoco AT, Paladin EC, Myers MS, Smith AL, Grace MS, Pham TT, O'Brien MB, Vogelsberger AM, Hryckowian AJ, Wynalek JL, Donis-Keller H, Bogel MW, Peebles CL, Cresawn SG, Hendrix RW.

J Mol Biol. 2010 Mar 19;397(1):119-43. doi: 10.1016/j.jmb.2010.01.011. Epub 2010 Jan 11.

PMID:
20064525
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Mycobacteriophages BPs, Angel and Halo: comparative genomics reveals a novel class of ultra-small mobile genetic elements.

Sampson T, Broussard GW, Marinelli LJ, Jacobs-Sera D, Ray M, Ko CC, Russell D, Hendrix RW, Hatfull GF.

Microbiology. 2009 Sep;155(Pt 9):2962-77. doi: 10.1099/mic.0.030486-0. Epub 2009 Jun 25.

PMID:
19556295
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Apollo: a community resource for genome annotation editing.

Lee E, Harris N, Gibson M, Chetty R, Lewis S.

Bioinformatics. 2009 Jul 15;25(14):1836-7. doi: 10.1093/bioinformatics/btp314. Epub 2009 May 13.

PMID:
19439563
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

NMR structure of the amino-terminal domain of the lambda integrase protein in complex with DNA: immobilization of a flexible tail facilitates beta-sheet recognition of the major groove.

Fadeev EA, Sam MD, Clubb RT.

J Mol Biol. 2009 May 15;388(4):682-90. doi: 10.1016/j.jmb.2009.03.041. Epub 2009 Mar 24.

PMID:
19324050
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Fluoromycobacteriophages for rapid, specific, and sensitive antibiotic susceptibility testing of Mycobacterium tuberculosis.

Piuri M, Jacobs WR Jr, Hatfull GF.

PLoS One. 2009;4(3):e4870. doi: 10.1371/journal.pone.0004870. Epub 2009 Mar 20.

PMID:
19300517
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

BRED: a simple and powerful tool for constructing mutant and recombinant bacteriophage genomes.

Marinelli LJ, Piuri M, SwigonovĂĄ Z, Balachandran A, Oldfield LM, van Kessel JC, Hatfull GF.

PLoS One. 2008;3(12):e3957. doi: 10.1371/journal.pone.0003957. Epub 2008 Dec 17.

PMID:
19088849
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Recombineering mycobacteria and their phages.

van Kessel JC, Marinelli LJ, Hatfull GF.

Nat Rev Microbiol. 2008 Nov;6(11):851-7. doi: 10.1038/nrmicro2014. Review.

PMID:
18923412
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Bacteriophage genomics.

Hatfull GF.

Curr Opin Microbiol. 2008 Oct;11(5):447-53. doi: 10.1016/j.mib.2008.09.004. Epub 2008 Oct 14. Review.

PMID:
18824125
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Mycobacterial recombineering.

van Kessel JC, Hatfull GF.

Methods Mol Biol. 2008;435:203-15. doi: 10.1007/978-1-59745-232-8_15.

PMID:
18370078
[PubMed - indexed for MEDLINE]
19.

Efficient point mutagenesis in mycobacteria using single-stranded DNA recombineering: characterization of antimycobacterial drug targets.

van Kessel JC, Hatfull GF.

Mol Microbiol. 2008 Mar;67(5):1094-107. doi: 10.1111/j.1365-2958.2008.06109.x. Epub 2008 Jan 22.

PMID:
18221264
[PubMed - indexed for MEDLINE]
20.

Genomic characterization of mycobacteriophage Giles: evidence for phage acquisition of host DNA by illegitimate recombination.

Morris P, Marinelli LJ, Jacobs-Sera D, Hendrix RW, Hatfull GF.

J Bacteriol. 2008 Mar;190(6):2172-82. doi: 10.1128/JB.01657-07. Epub 2008 Jan 4.

PMID:
18178732
[PubMed - indexed for MEDLINE]
Free PMC Article

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