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Results: 1 to 20 of 33

1.

The role of mammalian PPR domain proteins in the regulation of mitochondrial gene expression.

Rackham O, Filipovska A.

Biochim Biophys Acta. 2012 Sep-Oct;1819(9-10):1008-16. doi: 10.1016/j.bbagrm.2011.10.007. Epub 2011 Oct 26.

PMID:
22051507
[PubMed - indexed for MEDLINE]
2.

The human mitochondrial transcriptome.

Mercer TR, Neph S, Dinger ME, Crawford J, Smith MA, Shearwood AM, Haugen E, Bracken CP, Rackham O, Stamatoyannopoulos JA, Filipovska A, Mattick JS.

Cell. 2011 Aug 19;146(4):645-58. doi: 10.1016/j.cell.2011.06.051.

PMID:
21854988
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Involvement of human ELAC2 gene product in 3' end processing of mitochondrial tRNAs.

Brzezniak LK, Bijata M, Szczesny RJ, Stepien PP.

RNA Biol. 2011 Jul-Aug;8(4):616-26. doi: 10.4161/rna.8.4.15393. Epub 2011 Jul 1.

PMID:
21593607
[PubMed - indexed for MEDLINE]
Free Article
4.

Nuclear-localized tiny RNAs are associated with transcription initiation and splice sites in metazoans.

Taft RJ, Simons C, Nahkuri S, Oey H, Korbie DJ, Mercer TR, Holst J, Ritchie W, Wong JJ, Rasko JE, Rokhsar DS, Degnan BM, Mattick JS.

Nat Struct Mol Biol. 2010 Aug;17(8):1030-4. doi: 10.1038/nsmb.1841. Epub 2010 Jul 11.

PMID:
20622877
[PubMed - indexed for MEDLINE]
5.

Expanding the microRNA targeting code: functional sites with centered pairing.

Shin C, Nam JW, Farh KK, Chiang HR, Shkumatava A, Bartel DP.

Mol Cell. 2010 Jun 25;38(6):789-802. doi: 10.1016/j.molcel.2010.06.005.

PMID:
20620952
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Undetected antisense tRNAs in mitochondrial genomes?

Seligmann H.

Biol Direct. 2010 Jun 16;5:39. doi: 10.1186/1745-6150-5-39.

PMID:
20553583
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

A single Arabidopsis organellar protein has RNase P activity.

Gobert A, Gutmann B, Taschner A, Gössringer M, Holzmann J, Hartmann RK, Rossmanith W, Giegé P.

Nat Struct Mol Biol. 2010 Jun;17(6):740-4. doi: 10.1038/nsmb.1812. Epub 2010 May 16.

PMID:
20473316
[PubMed - indexed for MEDLINE]
8.

Human mitochondrial mRNAs--like members of all families, similar but different.

Temperley RJ, Wydro M, Lightowlers RN, Chrzanowska-Lightowlers ZM.

Biochim Biophys Acta. 2010 Jun-Jul;1797(6-7):1081-5. doi: 10.1016/j.bbabio.2010.02.036. Epub 2010 Mar 6. Review.

PMID:
20211597
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Mitochondrial tRNAs as light strand replication origins: similarity between anticodon loops and the loop of the light strand replication origin predicts initiation of DNA replication.

Seligmann H.

Biosystems. 2010 Feb;99(2):85-93. doi: 10.1016/j.biosystems.2009.09.003. Epub 2009 Sep 13.

PMID:
19755136
[PubMed - indexed for MEDLINE]
10.

Small RNAs derived from snoRNAs.

Taft RJ, Glazov EA, Lassmann T, Hayashizaki Y, Carninci P, Mattick JS.

RNA. 2009 Jul;15(7):1233-40. doi: 10.1261/rna.1528909. Epub 2009 May 27.

PMID:
19474147
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Long non-coding RNAs: insights into functions.

Mercer TR, Dinger ME, Mattick JS.

Nat Rev Genet. 2009 Mar;10(3):155-9. doi: 10.1038/nrg2521. Review.

PMID:
19188922
[PubMed - indexed for MEDLINE]
12.

RNA regulation of epigenetic processes.

Mattick JS, Amaral PP, Dinger ME, Mercer TR, Mehler MF.

Bioessays. 2009 Jan;31(1):51-9. doi: 10.1002/bies.080099. Review.

PMID:
19154003
[PubMed - indexed for MEDLINE]
13.

RNase P without RNA: identification and functional reconstitution of the human mitochondrial tRNA processing enzyme.

Holzmann J, Frank P, Löffler E, Bennett KL, Gerner C, Rossmanith W.

Cell. 2008 Oct 31;135(3):462-74. doi: 10.1016/j.cell.2008.09.013.

PMID:
18984158
[PubMed - indexed for MEDLINE]
Free Article
14.

Noncoding RNA in development.

Amaral PP, Mattick JS.

Mamm Genome. 2008 Aug;19(7-8):454-92. doi: 10.1007/s00335-008-9136-7. Epub 2008 Oct 7. Review.

PMID:
18839252
[PubMed - indexed for MEDLINE]
15.

Disruption of a mitochondrial RNA-binding protein gene results in decreased cytochrome b expression and a marked reduction in ubiquinol-cytochrome c reductase activity in mouse heart mitochondria.

Xu F, Ackerley C, Maj MC, Addis JB, Levandovskiy V, Lee J, Mackay N, Cameron JM, Robinson BH.

Biochem J. 2008 Nov 15;416(1):15-26. doi: 10.1042/BJ20080847.

PMID:
18729827
[PubMed - indexed for MEDLINE]
Free Article
16.

ZOOM! Zillions of oligos mapped.

Lin H, Zhang Z, Zhang MQ, Ma B, Li M.

Bioinformatics. 2008 Nov 1;24(21):2431-7. doi: 10.1093/bioinformatics/btn416. Epub 2008 Aug 6.

PMID:
18684737
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Expression of a novel non-coding mitochondrial RNA in human proliferating cells.

Villegas J, Burzio V, Villota C, Landerer E, Martinez R, Santander M, Martinez R, Pinto R, Vera MI, Boccardo E, Villa LL, Burzio LO.

Nucleic Acids Res. 2007;35(21):7336-47. Epub 2007 Oct 25.

PMID:
17962305
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.

ENCODE Project Consortium, Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE, Kuehn MS, Taylor CM, Neph S, Koch CM, Asthana S, Malhotra A, Adzhubei I, Greenbaum JA, Andrews RM, Flicek P, Boyle PJ, Cao H, Carter NP, Clelland GK, Davis S, Day N, Dhami P, Dillon SC, Dorschner MO, Fiegler H, Giresi PG, Goldy J, Hawrylycz M, Haydock A, Humbert R, James KD, Johnson BE, Johnson EM, Frum TT, Rosenzweig ER, Karnani N, Lee K, Lefebvre GC, Navas PA, Neri F, Parker SC, Sabo PJ, Sandstrom R, Shafer A, Vetrie D, Weaver M, Wilcox S, Yu M, Collins FS, Dekker J, Lieb JD, Tullius TD, Crawford GE, Sunyaev S, Noble WS, Dunham I, Denoeud F, Reymond A, Kapranov P, Rozowsky J, Zheng D, Castelo R, Frankish A, Harrow J, Ghosh S, Sandelin A, Hofacker IL, Baertsch R, Keefe D, Dike S, Cheng J, Hirsch HA, Sekinger EA, Lagarde J, Abril JF, Shahab A, Flamm C, Fried C, Hackermüller J, Hertel J, Lindemeyer M, Missal K, Tanzer A, Washietl S, Korbel J, Emanuelsson O, Pedersen JS, Holroyd N, Taylor R, Swarbreck D, Matthews N, Dickson MC, Thomas DJ, Weirauch MT, Gilbert J, Drenkow J, Bell I, Zhao X, Srinivasan KG, Sung WK, Ooi HS, Chiu KP, Foissac S, Alioto T, Brent M, Pachter L, Tress ML, Valencia A, Choo SW, Choo CY, Ucla C, Manzano C, Wyss C, Cheung E, Clark TG, Brown JB, Ganesh M, Patel S, Tammana H, Chrast J, Henrichsen CN, Kai C, Kawai J, Nagalakshmi U, Wu J, Lian Z, Lian J, Newburger P, Zhang X, Bickel P, Mattick JS, Carninci P, Hayashizaki Y, Weissman S, Hubbard T, Myers RM, Rogers J, Stadler PF, Lowe TM, Wei CL, Ruan Y, Struhl K, Gerstein M, Antonarakis SE, Fu Y, Green ED, Karaöz U, Siepel A, Taylor J, Liefer LA, Wetterstrand KA, Good PJ, Feingold EA, Guyer MS, Cooper GM, Asimenos G, Dewey CN, Hou M, Nikolaev S, Montoya-Burgos JI, Löytynoja A, Whelan S, Pardi F, Massingham T, Huang H, Zhang NR, Holmes I, Mullikin JC, Ureta-Vidal A, Paten B, Seringhaus M, Church D, Rosenbloom K, Kent WJ, Stone EA; NISC Comparative Sequencing Program; Baylor College of Medicine Human Genome Sequencing Center; Washington University Genome Sequencing Center; Broad Institute; Children's Hospital Oakland Research Institute, Batzoglou S, Goldman N, Hardison RC, Haussler D, Miller W, Sidow A, Trinklein ND, Zhang ZD, Barrera L, Stuart R, King DC, Ameur A, Enroth S, Bieda MC, Kim J, Bhinge AA, Jiang N, Liu J, Yao F, Vega VB, Lee CW, Ng P, Shahab A, Yang A, Moqtaderi Z, Zhu Z, Xu X, Squazzo S, Oberley MJ, Inman D, Singer MA, Richmond TA, Munn KJ, Rada-Iglesias A, Wallerman O, Komorowski J, Fowler JC, Couttet P, Bruce AW, Dovey OM, Ellis PD, Langford CF, Nix DA, Euskirchen G, Hartman S, Urban AE, Kraus P, Van Calcar S, Heintzman N, Kim TH, Wang K, Qu C, Hon G, Luna R, Glass CK, Rosenfeld MG, Aldred SF, Cooper SJ, Halees A, Lin JM, Shulha HP, Zhang X, Xu M, Haidar JN, Yu Y, Ruan Y, Iyer VR, Green RD, Wadelius C, Farnham PJ, Ren B, Harte RA, Hinrichs AS, Trumbower H, Clawson H, Hillman-Jackson J, Zweig AS, Smith K, Thakkapallayil A, Barber G, Kuhn RM, Karolchik D, Armengol L, Bird CP, de Bakker PI, Kern AD, Lopez-Bigas N, Martin JD, Stranger BE, Woodroffe A, Davydov E, Dimas A, Eyras E, Hallgrímsdóttir IB, Huppert J, Zody MC, Abecasis GR, Estivill X, Bouffard GG, Guan X, Hansen NF, Idol JR, Maduro VV, Maskeri B, McDowell JC, Park M, Thomas PJ, Young AC, Blakesley RW, Muzny DM, Sodergren E, Wheeler DA, Worley KC, Jiang H, Weinstock GM, Gibbs RA, Graves T, Fulton R, Mardis ER, Wilson RK, Clamp M, Cuff J, Gnerre S, Jaffe DB, Chang JL, Lindblad-Toh K, Lander ES, Koriabine M, Nefedov M, Osoegawa K, Yoshinaga Y, Zhu B, de Jong PJ.

Nature. 2007 Jun 14;447(7146):799-816.

PMID:
17571346
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

RNA maps reveal new RNA classes and a possible function for pervasive transcription.

Kapranov P, Cheng J, Dike S, Nix DA, Duttagupta R, Willingham AT, Stadler PF, Hertel J, Hackermüller J, Hofacker IL, Bell I, Cheung E, Drenkow J, Dumais E, Patel S, Helt G, Ganesh M, Ghosh S, Piccolboni A, Sementchenko V, Tammana H, Gingeras TR.

Science. 2007 Jun 8;316(5830):1484-8. Epub 2007 May 17.

PMID:
17510325
[PubMed - indexed for MEDLINE]
Free Article
20.

Identification of small non-coding RNAs from mitochondria and chloroplasts.

Lung B, Zemann A, Madej MJ, Schuelke M, Techritz S, Ruf S, Bock R, Hüttenhofer A.

Nucleic Acids Res. 2006;34(14):3842-52. Epub 2006 Aug 9.

PMID:
16899451
[PubMed - indexed for MEDLINE]
Free PMC Article
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