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Results: 1 to 20 of 34

1.

Mass spectrometry-based proteomics using Q Exactive, a high-performance benchtop quadrupole Orbitrap mass spectrometer.

Michalski A, Damoc E, Hauschild JP, Lange O, Wieghaus A, Makarov A, Nagaraj N, Cox J, Mann M, Horning S.

Mol Cell Proteomics. 2011 Sep;10(9):M111.011015. doi: 10.1074/mcp.M111.011015. Epub 2011 Jun 3.

PMID:
21642640
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Deep and highly sensitive proteome coverage by LC-MS/MS without prefractionation.

Thakur SS, Geiger T, Chatterjee B, Bandilla P, Fröhlich F, Cox J, Mann M.

Mol Cell Proteomics. 2011 Aug;10(8):M110.003699. doi: 10.1074/mcp.M110.003699. Epub 2011 May 17.

PMID:
21586754
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Ultra-high-pressure RPLC hyphenated to an LTQ-Orbitrap Velos reveals a linear relation between peak capacity and number of identified peptides.

Köcher T, Swart R, Mechtler K.

Anal Chem. 2011 Apr 1;83(7):2699-704. doi: 10.1021/ac103243t. Epub 2011 Mar 9.

PMID:
21388192
[PubMed - indexed for MEDLINE]
4.

More than 100,000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC-MS/MS.

Michalski A, Cox J, Mann M.

J Proteome Res. 2011 Apr 1;10(4):1785-93. doi: 10.1021/pr101060v. Epub 2011 Feb 28.

PMID:
21309581
[PubMed - indexed for MEDLINE]
5.

Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics.

Geiger T, Wisniewski JR, Cox J, Zanivan S, Kruger M, Ishihama Y, Mann M.

Nat Protoc. 2011 Feb;6(2):147-57. doi: 10.1038/nprot.2010.192.

PMID:
21293456
[PubMed - indexed for MEDLINE]
6.

Andromeda: a peptide search engine integrated into the MaxQuant environment.

Cox J, Neuhauser N, Michalski A, Scheltema RA, Olsen JV, Mann M.

J Proteome Res. 2011 Apr 1;10(4):1794-805. doi: 10.1021/pr101065j. Epub 2011 Feb 22.

PMID:
21254760
[PubMed - indexed for MEDLINE]
7.

The nucleolus under stress.

Boulon S, Westman BJ, Hutten S, Boisvert FM, Lamond AI.

Mol Cell. 2010 Oct 22;40(2):216-27. doi: 10.1016/j.molcel.2010.09.024. Review.

PMID:
20965417
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Yeast expression proteomics by high-resolution mass spectrometry.

Walther TC, Olsen JV, Mann M.

Methods Enzymol. 2010;470:259-80. doi: 10.1016/S0076-6879(10)70011-2. Epub 2010 Mar 1.

PMID:
20946814
[PubMed - indexed for MEDLINE]
9.

Value of using multiple proteases for large-scale mass spectrometry-based proteomics.

Swaney DL, Wenger CD, Coon JJ.

J Proteome Res. 2010 Mar 5;9(3):1323-9. doi: 10.1021/pr900863u.

PMID:
20113005
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Combination of FASP and StageTip-based fractionation allows in-depth analysis of the hippocampal membrane proteome.

Wiśniewski JR, Zougman A, Mann M.

J Proteome Res. 2009 Dec;8(12):5674-8. doi: 10.1021/pr900748n.

PMID:
19848406
[PubMed - indexed for MEDLINE]
11.

Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics.

Picotti P, Bodenmiller B, Mueller LN, Domon B, Aebersold R.

Cell. 2009 Aug 21;138(4):795-806. doi: 10.1016/j.cell.2009.05.051. Epub 2009 Aug 6.

PMID:
19664813
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Universal sample preparation method for proteome analysis.

Wiśniewski JR, Zougman A, Nagaraj N, Mann M.

Nat Methods. 2009 May;6(5):359-62. doi: 10.1038/nmeth.1322. Epub 2009 Apr 19.

PMID:
19377485
[PubMed - indexed for MEDLINE]
13.

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification.

Cox J, Mann M.

Nat Biotechnol. 2008 Dec;26(12):1367-72. doi: 10.1038/nbt.1511. Epub 2008 Nov 30.

PMID:
19029910
[PubMed - indexed for MEDLINE]
14.

Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast.

de Godoy LM, Olsen JV, Cox J, Nielsen ML, Hubner NC, Fröhlich F, Walther TC, Mann M.

Nature. 2008 Oct 30;455(7217):1251-4. doi: 10.1038/nature07341. Epub 2008 Sep 28.

PMID:
18820680
[PubMed - indexed for MEDLINE]
15.

Higher-energy C-trap dissociation for peptide modification analysis.

Olsen JV, Macek B, Lange O, Makarov A, Horning S, Mann M.

Nat Methods. 2007 Sep;4(9):709-12. Epub 2007 Aug 26.

PMID:
17721543
[PubMed - indexed for MEDLINE]
16.

Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system.

de Godoy LM, Olsen JV, de Souza GA, Li G, Mortensen P, Mann M.

Genome Biol. 2006;7(6):R50.

PMID:
16784548
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Harvesting the genome's bounty: integrative genomics.

Jorgensen P, Breitkreutz BJ, Breitkreutz K, Stark C, Liu G, Cook M, Sharom J, Nishikawa JL, Ketela T, Bellows D, Breitkreutz A, Rupes I, Boucher L, Dewar D, Vo M, Angeli M, Reguly T, Tong A, Andrews B, Boone C, Tyers M.

Cold Spring Harb Symp Quant Biol. 2003;68:431-43. Review. No abstract available.

PMID:
15338646
[PubMed - indexed for MEDLINE]
18.

A versatile toolbox for PCR-based tagging of yeast genes: new fluorescent proteins, more markers and promoter substitution cassettes.

Janke C, Magiera MM, Rathfelder N, Taxis C, Reber S, Maekawa H, Moreno-Borchart A, Doenges G, Schwob E, Schiebel E, Knop M.

Yeast. 2004 Aug;21(11):947-62.

PMID:
15334558
[PubMed - indexed for MEDLINE]
19.

Global mapping of the yeast genetic interaction network.

Tong AH, Lesage G, Bader GD, Ding H, Xu H, Xin X, Young J, Berriz GF, Brost RL, Chang M, Chen Y, Cheng X, Chua G, Friesen H, Goldberg DS, Haynes J, Humphries C, He G, Hussein S, Ke L, Krogan N, Li Z, Levinson JN, Lu H, Ménard P, Munyana C, Parsons AB, Ryan O, Tonikian R, Roberts T, Sdicu AM, Shapiro J, Sheikh B, Suter B, Wong SL, Zhang LV, Zhu H, Burd CG, Munro S, Sander C, Rine J, Greenblatt J, Peter M, Bretscher A, Bell G, Roth FP, Brown GW, Andrews B, Bussey H, Boone C.

Science. 2004 Feb 6;303(5659):808-13.

PMID:
14764870
[PubMed - indexed for MEDLINE]
Free Article
20.

Global analysis of protein expression in yeast.

Ghaemmaghami S, Huh WK, Bower K, Howson RW, Belle A, Dephoure N, O'Shea EK, Weissman JS.

Nature. 2003 Oct 16;425(6959):737-41.

PMID:
14562106
[PubMed - indexed for MEDLINE]
Free Article

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