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Results: 1 to 20 of 39

References for PMC Articles for PubMed (Select 21964433)

1.

Absolute SILAC-compatible expression strain allows Sumo-2 copy number determination in clinical samples.

Matic I, Jaffray EG, Oxenham SK, Groves MJ, Barratt CL, Tauro S, Stanley-Wall NR, Hay RT.

J Proteome Res. 2011 Oct 7;10(10):4869-75. doi: 10.1021/pr2004715. Epub 2011 Aug 25.

2.

Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics.

Geiger T, Wisniewski JR, Cox J, Zanivan S, Kruger M, Ishihama Y, Mann M.

Nat Protoc. 2011 Feb;6(2):147-57. doi: 10.1038/nprot.2010.192.

PMID:
21293456
3.

Andromeda: a peptide search engine integrated into the MaxQuant environment.

Cox J, Neuhauser N, Michalski A, Scheltema RA, Olsen JV, Mann M.

J Proteome Res. 2011 Apr 1;10(4):1794-805. doi: 10.1021/pr101065j. Epub 2011 Feb 22.

PMID:
21254760
4.

Defining the transcriptome and proteome in three functionally different human cell lines.

Lundberg E, Fagerberg L, Klevebring D, Matic I, Geiger T, Cox J, Algenäs C, Lundeberg J, Mann M, Uhlen M.

Mol Syst Biol. 2010 Dec 21;6:450. doi: 10.1038/msb.2010.106.

5.

Towards a knowledge-based Human Protein Atlas.

Uhlen M, Oksvold P, Fagerberg L, Lundberg E, Jonasson K, Forsberg M, Zwahlen M, Kampf C, Wester K, Hober S, Wernerus H, Björling L, Ponten F.

Nat Biotechnol. 2010 Dec;28(12):1248-50. doi: 10.1038/nbt1210-1248. No abstract available.

PMID:
21139605
6.

Creation of an antibody-based subcellular protein atlas.

Lundberg E, Uhlén M.

Proteomics. 2010 Nov;10(22):3984-96. doi: 10.1002/pmic.201000125. Review.

PMID:
20648481
7.

Proteomics on an Orbitrap benchtop mass spectrometer using all-ion fragmentation.

Geiger T, Cox J, Mann M.

Mol Cell Proteomics. 2010 Oct;9(10):2252-61. doi: 10.1074/mcp.M110.001537. Epub 2010 Jul 7.

8.

A global view of protein expression in human cells, tissues, and organs.

Pontén F, Gry M, Fagerberg L, Lundberg E, Asplund A, Berglund L, Oksvold P, Björling E, Hober S, Kampf C, Navani S, Nilsson P, Ottosson J, Persson A, Wernérus H, Wester K, Uhlén M.

Mol Syst Biol. 2009;5:337. doi: 10.1038/msb.2009.93. Epub 2009 Dec 22.

9.

Combination of FASP and StageTip-based fractionation allows in-depth analysis of the hippocampal membrane proteome.

Wiśniewski JR, Zougman A, Mann M.

J Proteome Res. 2009 Dec;8(12):5674-8. doi: 10.1021/pr900748n.

PMID:
19848406
10.

A dual pressure linear ion trap Orbitrap instrument with very high sequencing speed.

Olsen JV, Schwartz JC, Griep-Raming J, Nielsen ML, Damoc E, Denisov E, Lange O, Remes P, Taylor D, Splendore M, Wouters ER, Senko M, Makarov A, Mann M, Horning S.

Mol Cell Proteomics. 2009 Dec;8(12):2759-69. doi: 10.1074/mcp.M900375-MCP200. Epub 2009 Oct 14.

11.

Applying mass spectrometry-based proteomics to genetics, genomics and network biology.

Gstaiger M, Aebersold R.

Nat Rev Genet. 2009 Sep;10(9):617-27. doi: 10.1038/nrg2633. Review.

PMID:
19687803
12.

Universal sample preparation method for proteome analysis.

Wiśniewski JR, Zougman A, Nagaraj N, Mann M.

Nat Methods. 2009 May;6(5):359-62. doi: 10.1038/nmeth.1322. Epub 2009 Apr 19.

PMID:
19377485
13.

FLEXIQuant: a novel tool for the absolute quantification of proteins, and the simultaneous identification and quantification of potentially modified peptides.

Singh S, Springer M, Steen J, Kirschner MW, Steen H.

J Proteome Res. 2009 May;8(5):2201-10. doi: 10.1021/pr800654s.

14.

Isotope dilution strategies for absolute quantitative proteomics.

Brun V, Masselon C, Garin J, Dupuis A.

J Proteomics. 2009 Jul 21;72(5):740-9. doi: 10.1016/j.jprot.2009.03.007. Epub 2009 Mar 31. Review.

PMID:
19341828
15.

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification.

Cox J, Mann M.

Nat Biotechnol. 2008 Dec;26(12):1367-72. doi: 10.1038/nbt.1511. Epub 2008 Nov 30.

PMID:
19029910
16.

A genecentric Human Protein Atlas for expression profiles based on antibodies.

Berglund L, Björling E, Oksvold P, Fagerberg L, Asplund A, Szigyarto CA, Persson A, Ottosson J, Wernérus H, Nilsson P, Lundberg E, Sivertsson A, Navani S, Wester K, Kampf C, Hober S, Pontén F, Uhlén M.

Mol Cell Proteomics. 2008 Oct;7(10):2019-27. doi: 10.1074/mcp.R800013-MCP200. Review.

17.

A whole-genome bioinformatics approach to selection of antigens for systematic antibody generation.

Berglund L, Björling E, Jonasson K, Rockberg J, Fagerberg L, Al-Khalili Szigyarto C, Sivertsson A, Uhlén M.

Proteomics. 2008 Jul;8(14):2832-9. doi: 10.1002/pmic.200800203.

PMID:
18655051
18.

Quantitative proteomics as a new piece of the systems biology puzzle.

Bachi A, Bonaldi T.

J Proteomics. 2008 Aug 21;71(3):357-67. doi: 10.1016/j.jprot.2008.07.001. Epub 2008 Jul 9. Review.

PMID:
18640294
19.

Absolute SILAC for accurate quantitation of proteins in complex mixtures down to the attomole level.

Hanke S, Besir H, Oesterhelt D, Mann M.

J Proteome Res. 2008 Mar;7(3):1118-30. doi: 10.1021/pr7007175. Epub 2008 Feb 14.

PMID:
18271523
20.

The biological impact of mass-spectrometry-based proteomics.

Cravatt BF, Simon GM, Yates JR 3rd.

Nature. 2007 Dec 13;450(7172):991-1000. Review.

PMID:
18075578
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