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Items: 1 to 20 of 58

1.

Evolution and metabolic significance of the urea cycle in photosynthetic diatoms.

Allen AE, Dupont CL, Oborník M, Horák A, Nunes-Nesi A, McCrow JP, Zheng H, Johnson DA, Hu H, Fernie AR, Bowler C.

Nature. 2011 May 12;473(7346):203-7. doi: 10.1038/nature10074.

PMID:
21562560
2.

Localization of putative carbonic anhydrases in two marine diatoms, Phaeodactylum tricornutum and Thalassiosira pseudonana.

Tachibana M, Allen AE, Kikutani S, Endo Y, Bowler C, Matsuda Y.

Photosynth Res. 2011 Sep;109(1-3):205-21. doi: 10.1007/s11120-011-9634-4. Epub 2011 Mar 2.

PMID:
21365259
3.

Carbon concentrating mechanisms in eukaryotic marine phytoplankton.

Reinfelder JR.

Ann Rev Mar Sci. 2011;3:291-315. Review.

PMID:
21329207
4.

Efficiency of the CO2-concentrating mechanism of diatoms.

Hopkinson BM, Dupont CL, Allen AE, Morel FM.

Proc Natl Acad Sci U S A. 2011 Mar 8;108(10):3830-7. doi: 10.1073/pnas.1018062108. Epub 2011 Feb 14.

5.

Oceanographic and biogeochemical insights from diatom genomes.

Bowler C, Vardi A, Allen AE.

Ann Rev Mar Sci. 2010;2:333-65. Review.

PMID:
21141668
6.

Digital expression profiling of novel diatom transcripts provides insight into their biological functions.

Maheswari U, Jabbari K, Petit JL, Porcel BM, Allen AE, Cadoret JP, De Martino A, Heijde M, Kaas R, La Roche J, Lopez PJ, Martin-Jézéquel V, Meichenin A, Mock T, Schnitzler Parker M, Vardi A, Armbrust EV, Weissenbach J, Katinka M, Bowler C.

Genome Biol. 2010;11(8):R85. doi: 10.1186/gb-2010-11-8-r85. Epub 2010 Aug 25.

7.

A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids.

Janouskovec J, Horák A, Oborník M, Lukes J, Keeling PJ.

Proc Natl Acad Sci U S A. 2010 Jun 15;107(24):10949-54. doi: 10.1073/pnas.1003335107. Epub 2010 Jun 1.

8.

Phylogenomic evidence for separate acquisition of plastids in cryptophytes, haptophytes, and stramenopiles.

Baurain D, Brinkmann H, Petersen J, Rodríguez-Ezpeleta N, Stechmann A, Demoulin V, Roger AJ, Burger G, Lang BF, Philippe H.

Mol Biol Evol. 2010 Jul;27(7):1698-709. doi: 10.1093/molbev/msq059. Epub 2010 Mar 1.

9.

Genome-wide transcriptome analyses of silicon metabolism in Phaeodactylum tricornutum reveal the multilevel regulation of silicic acid transporters.

Sapriel G, Quinet M, Heijde M, Jourdren L, Tanty V, Luo G, Le Crom S, Lopez PJ.

PLoS One. 2009 Oct 14;4(10):e7458. doi: 10.1371/journal.pone.0007458.

10.

Genomic footprints of a cryptic plastid endosymbiosis in diatoms.

Moustafa A, Beszteri B, Maier UG, Bowler C, Valentin K, Bhattacharya D.

Science. 2009 Jun 26;324(5935):1724-6. doi: 10.1126/science.1172983.

11.

The life of diatoms in the world's oceans.

Armbrust EV.

Nature. 2009 May 14;459(7244):185-92. doi: 10.1038/nature08057. Review.

PMID:
19444204
12.

Estimating maximum likelihood phylogenies with PhyML.

Guindon S, Delsuc F, Dufayard JF, Gascuel O.

Methods Mol Biol. 2009;537:113-37. doi: 10.1007/978-1-59745-251-9_6.

PMID:
19378142
13.

Genomic insights into marine microalgae.

Parker MS, Mock T, Armbrust EV.

Annu Rev Genet. 2008;42:619-45. doi: 10.1146/annurev.genet.42.110807.091417. Review.

PMID:
18983264
14.

The Phaeodactylum genome reveals the evolutionary history of diatom genomes.

Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C, Maumus F, Otillar RP, Rayko E, Salamov A, Vandepoele K, Beszteri B, Gruber A, Heijde M, Katinka M, Mock T, Valentin K, Verret F, Berges JA, Brownlee C, Cadoret JP, Chiovitti A, Choi CJ, Coesel S, De Martino A, Detter JC, Durkin C, Falciatore A, Fournet J, Haruta M, Huysman MJ, Jenkins BD, Jiroutova K, Jorgensen RE, Joubert Y, Kaplan A, Kröger N, Kroth PG, La Roche J, Lindquist E, Lommer M, Martin-Jézéquel V, Lopez PJ, Lucas S, Mangogna M, McGinnis K, Medlin LK, Montsant A, Oudot-Le Secq MP, Napoli C, Obornik M, Parker MS, Petit JL, Porcel BM, Poulsen N, Robison M, Rychlewski L, Rynearson TA, Schmutz J, Shapiro H, Siaut M, Stanley M, Sussman MR, Taylor AR, Vardi A, von Dassow P, Vyverman W, Willis A, Wyrwicz LS, Rokhsar DS, Weissenbach J, Armbrust EV, Green BR, Van de Peer Y, Grigoriev IV.

Nature. 2008 Nov 13;456(7219):239-44. doi: 10.1038/nature07410. Epub 2008 Oct 15.

PMID:
18923393
15.

Whole-cell response of the pennate diatom Phaeodactylum tricornutum to iron starvation.

Allen AE, Laroche J, Maheswari U, Lommer M, Schauer N, Lopez PJ, Finazzi G, Fernie AR, Bowler C.

Proc Natl Acad Sci U S A. 2008 Jul 29;105(30):10438-43. doi: 10.1073/pnas.0711370105. Epub 2008 Jul 24.

16.

An improved general amino acid replacement matrix.

Le SQ, Gascuel O.

Mol Biol Evol. 2008 Jul;25(7):1307-20. doi: 10.1093/molbev/msn067. Epub 2008 Mar 26.

17.

Localization and targeting mechanisms of two chloroplastic beta-carbonic anhydrases in the marine diatom Phaeodactylum tricornutum.

Kitao Y, Harada H, Matsuda Y.

Physiol Plant. 2008 May;133(1):68-77. doi: 10.1111/j.1399-3054.2008.01053.x. Epub 2008 Feb 19.

PMID:
18298418
18.

A model for carbohydrate metabolism in the diatom Phaeodactylum tricornutum deduced from comparative whole genome analysis.

Kroth PG, Chiovitti A, Gruber A, Martin-Jezequel V, Mock T, Parker MS, Stanley MS, Kaplan A, Caron L, Weber T, Maheswari U, Armbrust EV, Bowler C.

PLoS One. 2008 Jan 9;3(1):e1426. doi: 10.1371/journal.pone.0001426.

19.

Annotation and expression profile analysis of cDNas from the Antarctic diatom Chaetoceros neogracile.

Jung G, Lee CG, Kang SH, Jin E.

J Microbiol Biotechnol. 2007 Aug;17(8):1330-7.

20.
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