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Results: 1 to 20 of 72

1.

Role for Dpy-30 in ES cell-fate specification by regulation of H3K4 methylation within bivalent domains.

Jiang H, Shukla A, Wang X, Chen WY, Bernstein BE, Roeder RG.

Cell. 2011 Feb 18;144(4):513-25. doi: 10.1016/j.cell.2011.01.020. Erratum in: Cell. 2011 Mar 4;144(5):825.

PMID:
21335234
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Reference Maps of human ES and iPS cell variation enable high-throughput characterization of pluripotent cell lines.

Bock C, Kiskinis E, Verstappen G, Gu H, Boulting G, Smith ZD, Ziller M, Croft GF, Amoroso MW, Oakley DH, Gnirke A, Eggan K, Meissner A.

Cell. 2011 Feb 4;144(3):439-52. doi: 10.1016/j.cell.2010.12.032.

PMID:
21295703
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Analysis and design of RNA sequencing experiments for identifying isoform regulation.

Katz Y, Wang ET, Airoldi EM, Burge CB.

Nat Methods. 2010 Dec;7(12):1009-15. doi: 10.1038/nmeth.1528. Epub 2010 Nov 7.

PMID:
21057496
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Long noncoding RNAs with enhancer-like function in human cells.

Ørom UA, Derrien T, Beringer M, Gumireddy K, Gardini A, Bussotti G, Lai F, Zytnicki M, Notredame C, Huang Q, Guigo R, Shiekhattar R.

Cell. 2010 Oct 1;143(1):46-58. doi: 10.1016/j.cell.2010.09.001.

PMID:
20887892
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Cloud-scale RNA-sequencing differential expression analysis with Myrna.

Langmead B, Hansen KD, Leek JT.

Genome Biol. 2010;11(8):R83. doi: 10.1186/gb-2010-11-8-r83. Epub 2010 Aug 11.

PMID:
20701754
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response.

Huarte M, Guttman M, Feldser D, Garber M, Koziol MJ, Kenzelmann-Broz D, Khalil AM, Zuk O, Amit I, Rabani M, Attardi LD, Regev A, Lander ES, Jacks T, Rinn JL.

Cell. 2010 Aug 6;142(3):409-19. doi: 10.1016/j.cell.2010.06.040.

PMID:
20673990
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Long noncoding RNA as modular scaffold of histone modification complexes.

Tsai MC, Manor O, Wan Y, Mosammaparast N, Wang JK, Lan F, Shi Y, Segal E, Chang HY.

Science. 2010 Aug 6;329(5992):689-93. doi: 10.1126/science.1192002. Epub 2010 Jul 8.

PMID:
20616235
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Transposable elements have rewired the core regulatory network of human embryonic stem cells.

Kunarso G, Chia NY, Jeyakani J, Hwang C, Lu X, Chan YS, Ng HH, Bourque G.

Nat Genet. 2010 Jul;42(7):631-4. doi: 10.1038/ng.600. Epub 2010 Jun 6.

PMID:
20526341
[PubMed - indexed for MEDLINE]
9.

A large fraction of extragenic RNA pol II transcription sites overlap enhancers.

De Santa F, Barozzi I, Mietton F, Ghisletti S, Polletti S, Tusi BK, Muller H, Ragoussis J, Wei CL, Natoli G.

PLoS Biol. 2010 May 11;8(5):e1000384. doi: 10.1371/journal.pbio.1000384.

PMID:
20485488
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs.

Guttman M, Garber M, Levin JZ, Donaghey J, Robinson J, Adiconis X, Fan L, Koziol MJ, Gnirke A, Nusbaum C, Rinn JL, Lander ES, Regev A.

Nat Biotechnol. 2010 May;28(5):503-10. doi: 10.1038/nbt.1633. Epub 2010 May 2. Erratum in: Nat Biotechnol. 2010 Jul;28(7):756.

PMID:
20436462
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Widespread transcription at neuronal activity-regulated enhancers.

Kim TK, Hemberg M, Gray JM, Costa AM, Bear DM, Wu J, Harmin DA, Laptewicz M, Barbara-Haley K, Kuersten S, Markenscoff-Papadimitriou E, Kuhl D, Bito H, Worley PF, Kreiman G, Greenberg ME.

Nature. 2010 May 13;465(7295):182-7. doi: 10.1038/nature09033. Epub 2010 Apr 14.

PMID:
20393465
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

RNA traffic control of chromatin complexes.

Koziol MJ, Rinn JL.

Curr Opin Genet Dev. 2010 Apr;20(2):142-8. doi: 10.1016/j.gde.2010.03.003. Epub 2010 Mar 31. Review.

PMID:
20362426
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Eset partners with Oct4 to restrict extraembryonic trophoblast lineage potential in embryonic stem cells.

Yuan P, Han J, Guo G, Orlov YL, Huss M, Loh YH, Yaw LP, Robson P, Lim B, Ng HH.

Genes Dev. 2009 Nov 1;23(21):2507-20. doi: 10.1101/gad.1831909.

PMID:
19884257
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

SetDB1 contributes to repression of genes encoding developmental regulators and maintenance of ES cell state.

Bilodeau S, Kagey MH, Frampton GM, Rahl PB, Young RA.

Genes Dev. 2009 Nov 1;23(21):2484-9. doi: 10.1101/gad.1837309.

PMID:
19884255
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1.

Barbie DA, Tamayo P, Boehm JS, Kim SY, Moody SE, Dunn IF, Schinzel AC, Sandy P, Meylan E, Scholl C, Fröhling S, Chan EM, Sos ML, Michel K, Mermel C, Silver SJ, Weir BA, Reiling JH, Sheng Q, Gupta PB, Wadlow RC, Le H, Hoersch S, Wittner BS, Ramaswamy S, Livingston DM, Sabatini DM, Meyerson M, Thomas RK, Lander ES, Mesirov JP, Root DE, Gilliland DG, Jacks T, Hahn WC.

Nature. 2009 Nov 5;462(7269):108-12. doi: 10.1038/nature08460. Epub 2009 Oct 21.

PMID:
19847166
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Nanog is the gateway to the pluripotent ground state.

Silva J, Nichols J, Theunissen TW, Guo G, van Oosten AL, Barrandon O, Wray J, Yamanaka S, Chambers I, Smith A.

Cell. 2009 Aug 21;138(4):722-37. doi: 10.1016/j.cell.2009.07.039.

PMID:
19703398
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Genomic and transcriptional co-localization of protein-coding and long non-coding RNA pairs in the developing brain.

Ponjavic J, Oliver PL, Lunter G, Ponting CP.

PLoS Genet. 2009 Aug;5(8):e1000617. doi: 10.1371/journal.pgen.1000617. Epub 2009 Aug 21.

PMID:
19696892
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Chd1 regulates open chromatin and pluripotency of embryonic stem cells.

Gaspar-Maia A, Alajem A, Polesso F, Sridharan R, Mason MJ, Heidersbach A, Ramalho-Santos J, McManus MT, Plath K, Meshorer E, Ramalho-Santos M.

Nature. 2009 Aug 13;460(7257):863-8. doi: 10.1038/nature08212. Epub 2009 Jul 8.

PMID:
19587682
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression.

Khalil AM, Guttman M, Huarte M, Garber M, Raj A, Rivea Morales D, Thomas K, Presser A, Bernstein BE, van Oudenaarden A, Regev A, Lander ES, Rinn JL.

Proc Natl Acad Sci U S A. 2009 Jul 14;106(28):11667-72. doi: 10.1073/pnas.0904715106. Epub 2009 Jul 1.

PMID:
19571010
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

The function of non-coding RNAs in genomic imprinting.

Koerner MV, Pauler FM, Huang R, Barlow DP.

Development. 2009 Jun;136(11):1771-83. doi: 10.1242/dev.030403. Review.

PMID:
19429783
[PubMed - indexed for MEDLINE]
Free PMC Article

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