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Results: 1 to 20 of 71

1.

Oceanographic and biogeochemical insights from diatom genomes.

Bowler C, Vardi A, Allen AE.

Ann Rev Mar Sci. 2010;2:333-65. Review.

PMID:
21141668
[PubMed - indexed for MEDLINE]
2.

Sequencing bias: comparison of different protocols of microRNA library construction.

Tian G, Yin X, Luo H, Xu X, Bolund L, Zhang X, Gan SQ, Li N.

BMC Biotechnol. 2010 Sep 6;10:64. doi: 10.1186/1472-6750-10-64. Erratum in: BMC Biotechnol. 2011;11:48. Gan, Shang-Quang [added]; Li, Ning [added].

PMID:
20815927
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

The Ectocarpus genome and the independent evolution of multicellularity in brown algae.

Cock JM, Sterck L, Rouzé P, Scornet D, Allen AE, Amoutzias G, Anthouard V, Artiguenave F, Aury JM, Badger JH, Beszteri B, Billiau K, Bonnet E, Bothwell JH, Bowler C, Boyen C, Brownlee C, Carrano CJ, Charrier B, Cho GY, Coelho SM, Collén J, Corre E, Da Silva C, Delage L, Delaroque N, Dittami SM, Doulbeau S, Elias M, Farnham G, Gachon CM, Gschloessl B, Heesch S, Jabbari K, Jubin C, Kawai H, Kimura K, Kloareg B, Küpper FC, Lang D, Le Bail A, Leblanc C, Lerouge P, Lohr M, Lopez PJ, Martens C, Maumus F, Michel G, Miranda-Saavedra D, Morales J, Moreau H, Motomura T, Nagasato C, Napoli CA, Nelson DR, Nyvall-Collén P, Peters AF, Pommier C, Potin P, Poulain J, Quesneville H, Read B, Rensing SA, Ritter A, Rousvoal S, Samanta M, Samson G, Schroeder DC, Ségurens B, Strittmatter M, Tonon T, Tregear JW, Valentin K, von Dassow P, Yamagishi T, Van de Peer Y, Wincker P.

Nature. 2010 Jun 3;465(7298):617-21. doi: 10.1038/nature09016.

PMID:
20520714
[PubMed - indexed for MEDLINE]
4.

Identification of miRNA from Porphyra yezoensis by high-throughput sequencing and bioinformatics analysis.

Liang C, Zhang X, Zou J, Xu D, Su F, Ye N.

PLoS One. 2010 May 19;5(5):e10698. doi: 10.1371/journal.pone.0010698.

PMID:
20502668
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Deep sequencing reveals differential expression of microRNAs in favorable versus unfavorable neuroblastoma.

Schulte JH, Marschall T, Martin M, Rosenstiel P, Mestdagh P, Schlierf S, Thor T, Vandesompele J, Eggert A, Schreiber S, Rahmann S, Schramm A.

Nucleic Acids Res. 2010 Sep;38(17):5919-28. doi: 10.1093/nar/gkq342. Epub 2010 May 13.

PMID:
20466808
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus.

Ma Z, Coruh C, Axtell MJ.

Plant Cell. 2010 Apr;22(4):1090-103. doi: 10.1105/tpc.110.073882. Epub 2010 Apr 20.

PMID:
20407023
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Potential impact of stress activated retrotransposons on genome evolution in a marine diatom.

Maumus F, Allen AE, Mhiri C, Hu H, Jabbari K, Vardi A, Grandbastien MA, Bowler C.

BMC Genomics. 2009 Dec 22;10:624. doi: 10.1186/1471-2164-10-624.

PMID:
20028555
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Ago2 immunoprecipitation identifies predicted microRNAs in human embryonic stem cells and neural precursors.

Goff LA, Davila J, Swerdel MR, Moore JC, Cohen RI, Wu H, Sun YE, Hart RP.

PLoS One. 2009 Sep 28;4(9):e7192. doi: 10.1371/journal.pone.0007192.

PMID:
19784364
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Applications of new sequencing technologies for transcriptome analysis.

Morozova O, Hirst M, Marra MA.

Annu Rev Genomics Hum Genet. 2009;10:135-51. doi: 10.1146/annurev-genom-082908-145957. Review.

PMID:
19715439
[PubMed - indexed for MEDLINE]
10.

Limitations and possibilities of small RNA digital gene expression profiling.

Linsen SE, de Wit E, Janssens G, Heater S, Chapman L, Parkin RK, Fritz B, Wyman SK, de Bruijn E, Voest EE, Kuersten S, Tewari M, Cuppen E.

Nat Methods. 2009 Jul;6(7):474-6. doi: 10.1038/nmeth0709-474. No abstract available.

PMID:
19564845
[PubMed - indexed for MEDLINE]
11.

Genomic footprints of a cryptic plastid endosymbiosis in diatoms.

Moustafa A, Beszteri B, Maier UG, Bowler C, Valentin K, Bhattacharya D.

Science. 2009 Jun 26;324(5935):1724-6. doi: 10.1126/science.1172983.

PMID:
19556510
[PubMed - indexed for MEDLINE]
Free Article
12.

Gene silencing in the marine diatom Phaeodactylum tricornutum.

De Riso V, Raniello R, Maumus F, Rogato A, Bowler C, Falciatore A.

Nucleic Acids Res. 2009 Aug;37(14):e96. doi: 10.1093/nar/gkp448. Epub 2009 May 31.

PMID:
19487243
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

SHRiMP: accurate mapping of short color-space reads.

Rumble SM, Lacroute P, Dalca AV, Fiume M, Sidow A, Brudno M.

PLoS Comput Biol. 2009 May;5(5):e1000386. doi: 10.1371/journal.pcbi.1000386. Epub 2009 May 22.

PMID:
19461883
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Origin, biogenesis, and activity of plant microRNAs.

Voinnet O.

Cell. 2009 Feb 20;136(4):669-87. doi: 10.1016/j.cell.2009.01.046. Review.

PMID:
19239888
[PubMed - indexed for MEDLINE]
Free Article
15.

Origins and Mechanisms of miRNAs and siRNAs.

Carthew RW, Sontheimer EJ.

Cell. 2009 Feb 20;136(4):642-55. doi: 10.1016/j.cell.2009.01.035. Review.

PMID:
19239886
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Update of the Diatom EST Database: a new tool for digital transcriptomics.

Maheswari U, Mock T, Armbrust EV, Bowler C.

Nucleic Acids Res. 2009 Jan;37(Database issue):D1001-5. doi: 10.1093/nar/gkn905. Epub 2008 Nov 23.

PMID:
19029140
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

The Phaeodactylum genome reveals the evolutionary history of diatom genomes.

Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C, Maumus F, Otillar RP, Rayko E, Salamov A, Vandepoele K, Beszteri B, Gruber A, Heijde M, Katinka M, Mock T, Valentin K, Verret F, Berges JA, Brownlee C, Cadoret JP, Chiovitti A, Choi CJ, Coesel S, De Martino A, Detter JC, Durkin C, Falciatore A, Fournet J, Haruta M, Huysman MJ, Jenkins BD, Jiroutova K, Jorgensen RE, Joubert Y, Kaplan A, Kröger N, Kroth PG, La Roche J, Lindquist E, Lommer M, Martin-Jézéquel V, Lopez PJ, Lucas S, Mangogna M, McGinnis K, Medlin LK, Montsant A, Oudot-Le Secq MP, Napoli C, Obornik M, Parker MS, Petit JL, Porcel BM, Poulsen N, Robison M, Rychlewski L, Rynearson TA, Schmutz J, Shapiro H, Siaut M, Stanley M, Sussman MR, Taylor AR, Vardi A, von Dassow P, Vyverman W, Willis A, Wyrwicz LS, Rokhsar DS, Weissenbach J, Armbrust EV, Green BR, Van de Peer Y, Grigoriev IV.

Nature. 2008 Nov 13;456(7219):239-44. doi: 10.1038/nature07410. Epub 2008 Oct 15.

PMID:
18923393
[PubMed - indexed for MEDLINE]
18.

Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications.

Ondov BD, Varadarajan A, Passalacqua KD, Bergman NH.

Bioinformatics. 2008 Dec 1;24(23):2776-7. doi: 10.1093/bioinformatics/btn512. Epub 2008 Oct 7.

PMID:
18842598
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Applications of next-generation sequencing technologies in functional genomics.

Morozova O, Marra MA.

Genomics. 2008 Nov;92(5):255-64. doi: 10.1016/j.ygeno.2008.07.001. Epub 2008 Aug 24. Review.

PMID:
18703132
[PubMed - indexed for MEDLINE]
Free Article
20.

Evolution of plant microRNAs and their targets.

Axtell MJ, Bowman JL.

Trends Plant Sci. 2008 Jul;13(7):343-9. doi: 10.1016/j.tplants.2008.03.009. Epub 2008 May 22. Review.

PMID:
18502167
[PubMed - indexed for MEDLINE]

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