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References for PMC Articles for PubMed (Select 21799663)


Analysing phosphorylation-based signalling networks by phospho flow cytometry.

Oberprieler NG, Taskén K.

Cell Signal. 2011 Jan;23(1):14-8. doi: 10.1016/j.cellsig.2010.07.009. Epub 2010 Jul 16. Review.


PTMScout, a Web resource for analysis of high throughput post-translational proteomics studies.

Naegle KM, Gymrek M, Joughin BA, Wagner JP, Welsch RE, Yaffe MB, Lauffenburger DA, White FM.

Mol Cell Proteomics. 2010 Nov;9(11):2558-70. doi: 10.1074/mcp.M110.001206. Epub 2010 Jul 14.


Novel invadopodia components revealed by differential proteomic analysis.

Attanasio F, Caldieri G, Giacchetti G, van Horssen R, Wieringa B, Buccione R.

Eur J Cell Biol. 2011 Feb-Mar;90(2-3):115-27. doi: 10.1016/j.ejcb.2010.05.004. Epub 2010 Jul 6.


Decoding signalling networks by mass spectrometry-based proteomics.

Choudhary C, Mann M.

Nat Rev Mol Cell Biol. 2010 Jun;11(6):427-39. doi: 10.1038/nrm2900. Epub 2010 May 12. Review.


Tyrosine phosphorylation inhibits PKM2 to promote the Warburg effect and tumor growth.

Hitosugi T, Kang S, Vander Heiden MG, Chung TW, Elf S, Lythgoe K, Dong S, Lonial S, Wang X, Chen GZ, Xie J, Gu TL, Polakiewicz RD, Roesel JL, Boggon TJ, Khuri FR, Gilliland DG, Cantley LC, Kaufman J, Chen J.

Sci Signal. 2009 Nov 17;2(97):ra73. doi: 10.1126/scisignal.2000431.


The cofilin activity cycle in lamellipodia and invadopodia.

Oser M, Condeelis J.

J Cell Biochem. 2009 Dec 15;108(6):1252-62. doi: 10.1002/jcb.22372. Review.


GAREM, a novel adaptor protein for growth factor receptor-bound protein 2, contributes to cellular transformation through the activation of extracellular signal-regulated kinase signaling.

Tashiro K, Tsunematsu T, Okubo H, Ohta T, Sano E, Yamauchi E, Taniguchi H, Konishi H.

J Biol Chem. 2009 Jul 24;284(30):20206-14. doi: 10.1074/jbc.M109.021139. Epub 2009 Jun 9.


Application of fuzzy c-means clustering in data analysis of metabolomics.

Li X, Lu X, Tian J, Gao P, Kong H, Xu G.

Anal Chem. 2009 Jun 1;81(11):4468-75. doi: 10.1021/ac900353t.


Annexin 2 has a dual role as regulator and effector of v-Src in cell transformation.

Hayes MJ, Moss SE.

J Biol Chem. 2009 Apr 10;284(15):10202-10. doi: 10.1074/jbc.M807043200. Epub 2009 Feb 4.


An integrated comparative phosphoproteomic and bioinformatic approach reveals a novel class of MPM-2 motifs upregulated in EGFRvIII-expressing glioblastoma cells.

Joughin BA, Naegle KM, Huang PH, Yaffe MB, Lauffenburger DA, White FM.

Mol Biosyst. 2009 Jan;5(1):59-67. doi: 10.1039/b815075c. Epub 2008 Oct 30.


Flexible informatics for linking experimental data to mathematical models via DataRail.

Saez-Rodriguez J, Goldsipe A, Muhlich J, Alexopoulos LG, Millard B, Lauffenburger DA, Sorger PK.

Bioinformatics. 2008 Mar 15;24(6):840-7. doi: 10.1093/bioinformatics/btn018. Epub 2008 Jan 24.


Paxillin phosphorylation controls invadopodia/podosomes spatiotemporal organization.

Badowski C, Pawlak G, Grichine A, Chabadel A, Oddou C, Jurdic P, Pfaff M, Albigès-Rizo C, Block MR.

Mol Biol Cell. 2008 Feb;19(2):633-45. Epub 2007 Nov 28.


Phospho.ELM: a database of phosphorylation sites--update 2008.

Diella F, Gould CM, Chica C, Via A, Gibson TJ.

Nucleic Acids Res. 2008 Jan;36(Database issue):D240-4. Epub 2007 Oct 25.


Quantitative proteomic analysis of phosphotyrosine-mediated cellular signaling networks.

Zhang Y, Wolf-Yadlin A, White FM.

Methods Mol Biol. 2007;359:203-12.


Evaluation of gene-expression clustering via mutual information distance measure.

Priness I, Maimon O, Ben-Gal I.

BMC Bioinformatics. 2007 Mar 30;8:111.


Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks.

Wolf-Yadlin A, Hautaniemi S, Lauffenburger DA, White FM.

Proc Natl Acad Sci U S A. 2007 Apr 3;104(14):5860-5. Epub 2007 Mar 26.


Annexin 2 regulates intestinal epithelial cell spreading and wound closure through Rho-related signaling.

Babbin BA, Parkos CA, Mandell KJ, Winfree LM, Laur O, Ivanov AI, Nusrat A.

Am J Pathol. 2007 Mar;170(3):951-66.


Clustering by passing messages between data points.

Frey BJ, Dueck D.

Science. 2007 Feb 16;315(5814):972-6. Epub 2007 Jan 11.


Global, in vivo, and site-specific phosphorylation dynamics in signaling networks.

Olsen JV, Blagoev B, Gnad F, Macek B, Kumar C, Mortensen P, Mann M.

Cell. 2006 Nov 3;127(3):635-48.

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