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Results: 1 to 20 of 33

References for PMC Articles for PubMed (Select 21795387)

1.

Identification and functional characterization of N-terminally acetylated proteins in Drosophila melanogaster.

Goetze S, Qeli E, Mosimann C, Staes A, Gerrits B, Roschitzki B, Mohanty S, Niederer EM, Laczko E, Timmerman E, Lange V, Hafen E, Aebersold R, Vandekerckhove J, Basler K, Ahrens CH, Gevaert K, Brunner E.

PLoS Biol. 2009 Nov;7(11):e1000236. doi: 10.1371/journal.pbio.1000236. Epub 2009 Nov 3.

2.

Identification of novel alternative splice isoforms of circulating proteins in a mouse model of human pancreatic cancer.

Menon R, Zhang Q, Zhang Y, Fermin D, Bardeesy N, DePinho RA, Lu C, Hanash SM, Omenn GS, States DJ.

Cancer Res. 2009 Jan 1;69(1):300-9. doi: 10.1158/0008-5472.CAN-08-2145.

3.

VectorBase: a data resource for invertebrate vector genomics.

Lawson D, Arensburger P, Atkinson P, Besansky NJ, Bruggner RV, Butler R, Campbell KS, Christophides GK, Christley S, Dialynas E, Hammond M, Hill CA, Konopinski N, Lobo NF, MacCallum RM, Madey G, Megy K, Meyer J, Redmond S, Severson DW, Stinson EO, Topalis P, Birney E, Gelbart WM, Kafatos FC, Louis C, Collins FH.

Nucleic Acids Res. 2009 Jan;37(Database issue):D583-7. doi: 10.1093/nar/gkn857. Epub 2008 Nov 21.

4.

Use of shotgun proteomics for the identification, confirmation, and correction of C. elegans gene annotations.

Merrihew GE, Davis C, Ewing B, Williams G, Käll L, Frewen BE, Noble WS, Green P, Thomas JH, MacCoss MJ.

Genome Res. 2008 Oct;18(10):1660-9. doi: 10.1101/gr.077644.108. Epub 2008 Jul 24.

5.

The proteome of Toxoplasma gondii: integration with the genome provides novel insights into gene expression and annotation.

Xia D, Sanderson SJ, Jones AR, Prieto JH, Yates JR, Bromley E, Tomley FM, Lal K, Sinden RE, Brunk BP, Roos DS, Wastling JM.

Genome Biol. 2008;9(7):R116. doi: 10.1186/gb-2008-9-7-r116. Epub 2008 Jul 21.

6.

Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics.

Baerenfaller K, Grossmann J, Grobei MA, Hull R, Hirsch-Hoffmann M, Yalovsky S, Zimmermann P, Grossniklaus U, Gruissem W, Baginsky S.

Science. 2008 May 16;320(5878):938-41. doi: 10.1126/science.1157956. Epub 2008 Apr 24.

7.

Comparative proteogenomics: combining mass spectrometry and comparative genomics to analyze multiple genomes.

Gupta N, Benhamida J, Bhargava V, Goodman D, Kain E, Kerman I, Nguyen N, Ollikainen N, Rodriguez J, Wang J, Lipton MS, Romine M, Bafna V, Smith RD, Pevzner PA.

Genome Res. 2008 Jul;18(7):1133-42. doi: 10.1101/gr.074344.107. Epub 2008 Apr 21.

8.

Quantitative proteomics using stable isotope labeling with amino acids in cell culture.

Harsha HC, Molina H, Pandey A.

Nat Protoc. 2008;3(3):505-16. doi: 10.1038/nprot.2008.2.

PMID:
18323819
9.

Identification and molecular characterization of a novel protein Saglin as a target of monoclonal antibodies affecting salivary gland infectivity of Plasmodium sporozoites.

Okulate MA, Kalume DE, Reddy R, Kristiansen T, Bhattacharyya M, Chaerkady R, Pandey A, Kumar N.

Insect Mol Biol. 2007 Dec;16(6):711-22.

PMID:
18093000
10.

Whole genome searching with shotgun proteomic data: applications for genome annotation.

Sevinsky JR, Cargile BJ, Bunger MK, Meng F, Yates NA, Hendrickson RC, Stephenson JL Jr.

J Proteome Res. 2008 Jan;7(1):80-8. Epub 2007 Dec 7.

PMID:
18062665
11.

Determination and validation of principal gene products.

Tress ML, Wesselink JJ, Frankish A, López G, Goldman N, Löytynoja A, Massingham T, Pardi F, Whelan S, Harrow J, Valencia A.

Bioinformatics. 2008 Jan 1;24(1):11-7. Epub 2007 Nov 15.

12.

A high-quality catalog of the Drosophila melanogaster proteome.

Brunner E, Ahrens CH, Mohanty S, Baetschmann H, Loevenich S, Potthast F, Deutsch EW, Panse C, de Lichtenberg U, Rinner O, Lee H, Pedrioli PG, Malmstrom J, Koehler K, Schrimpf S, Krijgsveld J, Kregenow F, Heck AJ, Hafen E, Schlapbach R, Aebersold R.

Nat Biotechnol. 2007 May;25(5):576-83. Epub 2007 Apr 22.

PMID:
17450130
13.

Diversity of translation start sites may define increased complexity of the human short ORFeome.

Oyama M, Kozuka-Hata H, Suzuki Y, Semba K, Yamamoto T, Sugano S.

Mol Cell Proteomics. 2007 Jun;6(6):1000-6. Epub 2007 Feb 21.

14.

Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry.

Molina H, Horn DM, Tang N, Mathivanan S, Pandey A.

Proc Natl Acad Sci U S A. 2007 Feb 13;104(7):2199-204. Epub 2007 Feb 7.

15.

Snap: an integrated SNP annotation platform.

Li S, Ma L, Li H, Vang S, Hu Y, Bolund L, Wang J.

Nucleic Acids Res. 2007 Jan;35(Database issue):D707-10. Epub 2006 Nov 29.

16.

Transcriptome analyses of human genes and applications for proteome analyses.

Suzuki Y, Sugano S.

Curr Protein Pept Sci. 2006 Apr;7(2):147-63. Review.

PMID:
16611140
17.

Genome annotation of Anopheles gambiae using mass spectrometry-derived data.

Kalume DE, Peri S, Reddy R, Zhong J, Okulate M, Kumar N, Pandey A.

BMC Genomics. 2005 Sep 19;6:128.

18.

A proteomic analysis of salivary glands of female Anopheles gambiae mosquito.

Kalume DE, Okulate M, Zhong J, Reddy R, Suresh S, Deshpande N, Kumar N, Pandey A.

Proteomics. 2005 Sep;5(14):3765-77.

PMID:
16127729
19.

A proteomic analysis of human hemodialysis fluid.

Molina H, Bunkenborg J, Reddy GH, Muthusamy B, Scheel PJ, Pandey A.

Mol Cell Proteomics. 2005 May;4(5):637-50. Epub 2005 Feb 20.

20.

Gene finding in novel genomes.

Korf I.

BMC Bioinformatics. 2004 May 14;5:59.

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