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Results: 1 to 20 of 23

1.

A unique family of Mrr-like modification-dependent restriction endonucleases.

Zheng Y, Cohen-Karni D, Xu D, Chin HG, Wilson G, Pradhan S, Roberts RJ.

Nucleic Acids Res. 2010 Sep;38(16):5527-34. doi: 10.1093/nar/gkq327. Epub 2010 May 5.

PMID:
20444879
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing.

Huang Y, Pastor WA, Shen Y, Tahiliani M, Liu DR, Rao A.

PLoS One. 2010 Jan 26;5(1):e8888. doi: 10.1371/journal.pone.0008888.

PMID:
20126651
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Differential binding of Escherichia coli McrA protein to DNA sequences that contain the dinucleotide m5CpG.

Mulligan EA, Hatchwell E, McCorkle SR, Dunn JJ.

Nucleic Acids Res. 2010 Apr;38(6):1997-2005. doi: 10.1093/nar/gkp1120. Epub 2009 Dec 16.

PMID:
20015968
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

REBASE--a database for DNA restriction and modification: enzymes, genes and genomes.

Roberts RJ, Vincze T, Posfai J, Macelis D.

Nucleic Acids Res. 2010 Jan;38(Database issue):D234-6. doi: 10.1093/nar/gkp874. Epub 2009 Oct 21.

PMID:
19846593
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Human DNA methylomes at base resolution show widespread epigenomic differences.

Lister R, Pelizzola M, Dowen RH, Hawkins RD, Hon G, Tonti-Filippini J, Nery JR, Lee L, Ye Z, Ngo QM, Edsall L, Antosiewicz-Bourget J, Stewart R, Ruotti V, Millar AH, Thomson JA, Ren B, Ecker JR.

Nature. 2009 Nov 19;462(7271):315-22. doi: 10.1038/nature08514. Epub 2009 Oct 14.

PMID:
19829295
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain.

Kriaucionis S, Heintz N.

Science. 2009 May 15;324(5929):929-30. doi: 10.1126/science.1169786. Epub 2009 Apr 16.

PMID:
19372393
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1.

Tahiliani M, Koh KP, Shen Y, Pastor WA, Bandukwala H, Brudno Y, Agarwal S, Iyer LM, Liu DR, Aravind L, Rao A.

Science. 2009 May 15;324(5929):930-5. doi: 10.1126/science.1170116. Epub 2009 Apr 16.

PMID:
19372391
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning.

Cokus SJ, Feng S, Zhang X, Chen Z, Merriman B, Haudenschild CD, Pradhan S, Nelson SF, Pellegrini M, Jacobsen SE.

Nature. 2008 Mar 13;452(7184):215-9. doi: 10.1038/nature06745. Epub 2008 Feb 17.

PMID:
18278030
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Substrate specificity of new methyl-directed DNA endonuclease GlaI.

Tarasova GV, Nayakshina TN, Degtyarev SK.

BMC Mol Biol. 2008 Jan 15;9:7. doi: 10.1186/1471-2199-9-7.

PMID:
18194583
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Epigenetic inheritance in plants.

Henderson IR, Jacobsen SE.

Nature. 2007 May 24;447(7143):418-24. Review.

PMID:
17522675
[PubMed - indexed for MEDLINE]
11.

A type IV modification dependent restriction nuclease that targets glucosylated hydroxymethyl cytosine modified DNAs.

Bair CL, Black LW.

J Mol Biol. 2007 Feb 23;366(3):768-78. Epub 2006 Nov 21.

PMID:
17188297
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

WebLogo: a sequence logo generator.

Crooks GE, Hon G, Chandonia JM, Brenner SE.

Genome Res. 2004 Jun;14(6):1188-90.

PMID:
15173120
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Bisulfite genomic sequencing: systematic investigation of critical experimental parameters.

Grunau C, Clark SJ, Rosenthal A.

Nucleic Acids Res. 2001 Jul 1;29(13):E65-5.

PMID:
11433041
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The McrBC endonuclease translocates DNA in a reaction dependent on GTP hydrolysis.

Panne D, Raleigh EA, Bickle TA.

J Mol Biol. 1999 Jul 2;290(1):49-60.

PMID:
10388557
[PubMed - indexed for MEDLINE]
15.

Modified bases in bacteriophage DNAs.

Warren RA.

Annu Rev Microbiol. 1980;34:137-58. Review. No abstract available.

PMID:
7002022
[PubMed - indexed for MEDLINE]
16.

Cellular differentiation, cytidine analogs and DNA methylation.

Jones PA, Taylor SM.

Cell. 1980 May;20(1):85-93.

PMID:
6156004
[PubMed - indexed for MEDLINE]
17.

Restriction of nonglucosylated T-even bacteriophage: properties of permissive mutants of Escherichia coli B and K12.

Revel HR.

Virology. 1967 Apr;31(4):688-701. No abstract available.

PMID:
4290282
[PubMed - indexed for MEDLINE]
18.

Escherichia coli K-12 restricts DNA containing 5-methylcytosine.

Raleigh EA, Wilson G.

Proc Natl Acad Sci U S A. 1986 Dec;83(23):9070-4.

PMID:
3024165
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Genetic and physical mapping of the mcrA (rglA) and mcrB (rglB) loci of Escherichia coli K-12.

Raleigh EA, Trimarchi R, Revel H.

Genetics. 1989 Jun;122(2):279-96.

PMID:
2548920
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Characterization and expression of the Escherichia coli Mrr restriction system.

Waite-Rees PA, Keating CJ, Moran LS, Slatko BE, Hornstra LJ, Benner JS.

J Bacteriol. 1991 Aug;173(16):5207-19.

PMID:
1650347
[PubMed - indexed for MEDLINE]
Free PMC Article

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