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Items: 11

1.

The open biomedical annotator.

Jonquet C, Shah NH, Musen MA.

Summit on Translat Bioinforma. 2009 Mar 1;2009:56-60.

2.

REDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila.

Gallo SM, Gerrard DT, Miner D, Simich M, Des Soye B, Bergman CM, Halfon MS.

Nucleic Acids Res. 2011 Jan;39(Database issue):D118-23. doi: 10.1093/nar/gkq999. Epub 2010 Oct 21.

3.

ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level.

Rocca-Serra P, Brandizi M, Maguire E, Sklyar N, Taylor C, Begley K, Field D, Harris S, Hide W, Hofmann O, Neumann S, Sterk P, Tong W, Sansone SA.

Bioinformatics. 2010 Sep 15;26(18):2354-6. doi: 10.1093/bioinformatics/btq415. Epub 2010 Aug 2.

4.

Building a biomedical ontology recommender web service.

Jonquet C, Musen MA, Shah NH.

J Biomed Semantics. 2010 Jun 22;1 Suppl 1:S1. doi: 10.1186/2041-1480-1-S1-S1.

5.

Creating mappings for ontologies in biomedicine: simple methods work.

Ghazvinian A, Noy NF, Musen MA.

AMIA Annu Symp Proc. 2009 Nov 14;2009:198-202.

6.

BioPortal: ontologies and integrated data resources at the click of a mouse.

Noy NF, Shah NH, Whetzel PL, Dai B, Dorf M, Griffith N, Jonquet C, Rubin DL, Storey MA, Chute CG, Musen MA.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W170-3. doi: 10.1093/nar/gkp440. Epub 2009 May 29.

7.

Ontology-driven indexing of public datasets for translational bioinformatics.

Shah NH, Jonquet C, Chiang AP, Butte AJ, Chen R, Musen MA.

BMC Bioinformatics. 2009 Feb 5;10 Suppl 2:S1. doi: 10.1186/1471-2105-10-S2-S1.

8.

The IR RadLex project: an interventional radiology lexicon--a collaborative project of the Radiological Society of North America and the Society of Interventional Radiology.

Kundu S, Itkin M, Gervais DA, Krishnamurthy VN, Wallace MJ, Cardella JF, Rubin DL, Langlotz CP.

J Vasc Interv Radiol. 2009 Apr;20(4):433-5. doi: 10.1016/j.jvir.2008.10.022. Epub 2008 Dec 11. No abstract available.

PMID:
19081735
9.

Big data: The future of biocuration.

Howe D, Costanzo M, Fey P, Gojobori T, Hannick L, Hide W, Hill DP, Kania R, Schaeffer M, St Pierre S, Twigger S, White O, Rhee SY.

Nature. 2008 Sep 4;455(7209):47-50. doi: 10.1038/455047a. No abstract available.

10.

RadLex: a new method for indexing online educational materials.

Langlotz CP.

Radiographics. 2006 Nov-Dec;26(6):1595-7. No abstract available. Erratum in: Radiographics. 2007 Jan-Feb;27(1):62.

PMID:
17102038
11.

Oryzabase. An integrated biological and genome information database for rice.

Kurata N, Yamazaki Y.

Plant Physiol. 2006 Jan;140(1):12-7.

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