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Results: 1 to 20 of 70

References for PMC Articles for PubMed (Select 21187861)

1.
2.

Non-homologous isofunctional enzymes: a systematic analysis of alternative solutions in enzyme evolution.

Omelchenko MV, Galperin MY, Wolf YI, Koonin EV.

Biol Direct. 2010 Apr 30;5:31. doi: 10.1186/1745-6150-5-31.

3.

Quantitative comparison of catalytic mechanisms and overall reactions in convergently evolved enzymes: implications for classification of enzyme function.

Almonacid DE, Yera ER, Mitchell JB, Babbitt PC.

PLoS Comput Biol. 2010 Mar 12;6(3):e1000700. doi: 10.1371/journal.pcbi.1000700.

4.

AnEnPi: identification and annotation of analogous enzymes.

Otto TD, Guimarães AC, Degrave WM, de Miranda AB.

BMC Bioinformatics. 2008 Dec 17;9:544. doi: 10.1186/1471-2105-9-544.

5.

The Wolbachia endosymbiont of Brugia malayi has an active phosphoglycerate mutase: a candidate target for anti-filarial therapies.

Foster JM, Raverdy S, Ganatra MB, Colussi PA, Taron CH, Carlow CK.

Parasitol Res. 2009 Apr;104(5):1047-52. doi: 10.1007/s00436-008-1287-7. Epub 2008 Nov 29.

PMID:
19043737
6.

Multiple genome sequences reveal adaptations of a phototrophic bacterium to sediment microenvironments.

Oda Y, Larimer FW, Chain PS, Malfatti S, Shin MV, Vergez LM, Hauser L, Land ML, Braatsch S, Beatty JT, Pelletier DA, Schaefer AL, Harwood CS.

Proc Natl Acad Sci U S A. 2008 Nov 25;105(47):18543-8. doi: 10.1073/pnas.0809160105. Epub 2008 Nov 19.

7.

Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria.

Dufresne A, Ostrowski M, Scanlan DJ, Garczarek L, Mazard S, Palenik BP, Paulsen IT, de Marsac NT, Wincker P, Dossat C, Ferriera S, Johnson J, Post AF, Hess WR, Partensky F.

Genome Biol. 2008;9(5):R90. doi: 10.1186/gb-2008-9-5-r90. Epub 2008 May 28.

8.

The emergence and fate of horizontally acquired genes in Escherichia coli.

van Passel MW, Marri PR, Ochman H.

PLoS Comput Biol. 2008 Apr 11;4(4):e1000059. doi: 10.1371/journal.pcbi.1000059.

9.

Patterns and implications of gene gain and loss in the evolution of Prochlorococcus.

Kettler GC, Martiny AC, Huang K, Zucker J, Coleman ML, Rodrigue S, Chen F, Lapidus A, Ferriera S, Johnson J, Steglich C, Church GM, Richardson P, Chisholm SW.

PLoS Genet. 2007 Dec;3(12):e231.

10.

Molecular and biochemical characterization of nematode cofactor independent phosphoglycerate mutases.

Raverdy S, Zhang Y, Foster J, Carlow CK.

Mol Biochem Parasitol. 2007 Dec;156(2):210-6. Epub 2007 Aug 19.

PMID:
17897734
11.

Horizontal gene transfer in trypanosomatids.

Opperdoes FR, Michels PA.

Trends Parasitol. 2007 Oct;23(10):470-6. Epub 2007 Sep 7.

PMID:
17826337
12.

Convergent evolution of enzyme active sites is not a rare phenomenon.

Gherardini PF, Wass MN, Helmer-Citterich M, Sternberg MJ.

J Mol Biol. 2007 Sep 21;372(3):817-45. Epub 2007 Jun 14.

PMID:
17681532
13.

Characterization of cofactor-dependent and cofactor-independent phosphoglycerate mutases from Archaea.

Johnsen U, Schönheit P.

Extremophiles. 2007 Sep;11(5):647-57. Epub 2007 Jun 19.

PMID:
17576516
14.

A comprehensive transposon mutant library of Francisella novicida, a bioweapon surrogate.

Gallagher LA, Ramage E, Jacobs MA, Kaul R, Brittnacher M, Manoil C.

Proc Natl Acad Sci U S A. 2007 Jan 16;104(3):1009-14. Epub 2007 Jan 10.

15.

Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography.

Normand P, Lapierre P, Tisa LS, Gogarten JP, Alloisio N, Bagnarol E, Bassi CA, Berry AM, Bickhart DM, Choisne N, Couloux A, Cournoyer B, Cruveiller S, Daubin V, Demange N, Francino MP, Goltsman E, Huang Y, Kopp OR, Labarre L, Lapidus A, Lavire C, Marechal J, Martinez M, Mastronunzio JE, Mullin BC, Niemann J, Pujic P, Rawnsley T, Rouy Z, Schenowitz C, Sellstedt A, Tavares F, Tomkins JP, Vallenet D, Valverde C, Wall LG, Wang Y, Medigue C, Benson DR.

Genome Res. 2007 Jan;17(1):7-15. Epub 2006 Dec 6.

16.

Reconstructing the mosaic glycolytic pathway of the anaerobic eukaryote Monocercomonoides.

Liapounova NA, Hampl V, Gordon PM, Sensen CW, Gedamu L, Dacks JB.

Eukaryot Cell. 2006 Dec;5(12):2138-46. Epub 2006 Oct 27.

17.

Cofactor-independent phosphoglycerate mutase is an essential gene in procyclic form Trypanosoma brucei.

Djikeng A, Raverdy S, Foster J, Bartholomeu D, Zhang Y, El-Sayed NM, Carlow C.

Parasitol Res. 2007 Mar;100(4):887-92. Epub 2006 Oct 6.

PMID:
17024352
19.

Essential genes of a minimal bacterium.

Glass JI, Assad-Garcia N, Alperovich N, Yooseph S, Lewis MR, Maruf M, Hutchison CA 3rd, Smith HO, Venter JC.

Proc Natl Acad Sci U S A. 2006 Jan 10;103(2):425-30. Epub 2006 Jan 3.

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