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References for PMC Articles for PubMed (Select 21135415)

1.

Combined statistical analyses of peptide intensities and peptide occurrences improves identification of significant peptides from MS-based proteomics data.

Webb-Robertson BJ, McCue LA, Waters KM, Matzke MM, Jacobs JM, Metz TO, Varnum SM, Pounds JG.

J Proteome Res. 2010 Nov 5;9(11):5748-56. doi: 10.1021/pr1005247. Epub 2010 Oct 8.

2.

Inflammation-associated S100 proteins: new mechanisms that regulate function.

Goyette J, Geczy CL.

Amino Acids. 2011 Oct;41(4):821-42. doi: 10.1007/s00726-010-0528-0. Epub 2010 Mar 6. Review.

PMID:
20213444
3.

Single- and multi-wall carbon nanotubes versus asbestos: are the carbon nanotubes a new health risk to humans?

Pacurari M, Castranova V, Vallyathan V.

J Toxicol Environ Health A. 2010;73(5):378-95. doi: 10.1080/15287390903486527. Review.

PMID:
20155580
4.

Biopersistence and potential adverse health impacts of fibrous nanomaterials: what have we learned from asbestos?

Sanchez VC, Pietruska JR, Miselis NR, Hurt RH, Kane AB.

Wiley Interdiscip Rev Nanomed Nanobiotechnol. 2009 Sep-Oct;1(5):511-29. doi: 10.1002/wnan.41. Review.

5.

Proteomics-based safety evaluation of multi-walled carbon nanotubes.

Haniu H, Matsuda Y, Takeuchi K, Kim YA, Hayashi T, Endo M.

Toxicol Appl Pharmacol. 2010 Feb 1;242(3):256-62. doi: 10.1016/j.taap.2009.10.015. Epub 2009 Oct 27.

PMID:
19874835
7.

Inhalation toxicity of multiwall carbon nanotubes in rats exposed for 3 months.

Ma-Hock L, Treumann S, Strauss V, Brill S, Luizi F, Mertler M, Wiench K, Gamer AO, van Ravenzwaay B, Landsiedel R.

Toxicol Sci. 2009 Dec;112(2):468-81. doi: 10.1093/toxsci/kfp146. Epub 2009 Jul 7.

8.

Increased expression of inflammatory pathway genes in skeletal muscle during surgery.

Witasp A, Nordfors L, Schalling M, Nygren J, Ljungqvist O, Thorell A.

Clin Nutr. 2009 Jun;28(3):291-8. doi: 10.1016/j.clnu.2009.03.003. Epub 2009 Apr 5.

PMID:
19346035
9.

Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data.

Jaitly N, Mayampurath A, Littlefield K, Adkins JN, Anderson GA, Smith RD.

BMC Bioinformatics. 2009 Mar 17;10:87. doi: 10.1186/1471-2105-10-87.

10.

Oxidative modifications of S100 proteins: functional regulation by redox.

Lim SY, Raftery MJ, Goyette J, Hsu K, Geczy CL.

J Leukoc Biol. 2009 Sep;86(3):577-87. doi: 10.1189/jlb.1008608. Review.

11.

Proteome analysis of bronchoalveolar lavage in individuals from Metsovo, nonoccupationally exposed to asbestos.

Archimandriti DT, Dalavanga YA, Cianti R, Bianchi L, Manda-Stachouli C, Armini A, Koukkou AI, Rottoli P, Constantopoulos SH, Bini L.

J Proteome Res. 2009 Feb;8(2):860-9. doi: 10.1021/pr800370n.

PMID:
19105609
12.

Chitinase 3-Like-1 (CHI3L1): a putative disease marker at the interface of proteomics and glycomics.

Coffman FD.

Crit Rev Clin Lab Sci. 2008;45(6):531-62. doi: 10.1080/10408360802334743 . Review.

PMID:
19003601
13.

Re: Induction of mesothelioma in p53+/- mouse by intraperitoneal application of multi-wall carbon nanotube.

Donaldson K, Stone V, Seaton A, Tran L, Aitken R, Poland C.

J Toxicol Sci. 2008 Aug;33(3):385; author reply 386-8. No abstract available.

14.

Inhalation vs. aspiration of single-walled carbon nanotubes in C57BL/6 mice: inflammation, fibrosis, oxidative stress, and mutagenesis.

Shvedova AA, Kisin E, Murray AR, Johnson VJ, Gorelik O, Arepalli S, Hubbs AF, Mercer RR, Keohavong P, Sussman N, Jin J, Yin J, Stone S, Chen BT, Deye G, Maynard A, Castranova V, Baron PA, Kagan VE.

Am J Physiol Lung Cell Mol Physiol. 2008 Oct;295(4):L552-65. doi: 10.1152/ajplung.90287.2008. Epub 2008 Jul 25.

15.

Structural defects play a major role in the acute lung toxicity of multiwall carbon nanotubes: toxicological aspects.

Muller J, Huaux F, Fonseca A, Nagy JB, Moreau N, Delos M, Raymundo-Piñero E, Béguin F, Kirsch-Volders M, Fenoglio I, Fubini B, Lison D.

Chem Res Toxicol. 2008 Sep;21(9):1698-705. doi: 10.1021/tx800101p. Epub 2008 Jul 18.

PMID:
18636756
16.

Increased accumulation of neutrophils and decreased fibrosis in the lung of NADPH oxidase-deficient C57BL/6 mice exposed to carbon nanotubes.

Shvedova AA, Kisin ER, Murray AR, Kommineni C, Castranova V, Fadeel B, Kagan VE.

Toxicol Appl Pharmacol. 2008 Sep 1;231(2):235-40. doi: 10.1016/j.taap.2008.04.018. Epub 2008 Apr 30.

PMID:
18534653
17.

DAnTE: a statistical tool for quantitative analysis of -omics data.

Polpitiya AD, Qian WJ, Jaitly N, Petyuk VA, Adkins JN, Camp DG 2nd, Anderson GA, Smith RD.

Bioinformatics. 2008 Jul 1;24(13):1556-8. doi: 10.1093/bioinformatics/btn217. Epub 2008 May 3.

18.

Development and validation of sandwich ELISA microarrays with minimal assay interference.

Gonzalez RM, Seurynck-Servoss SL, Crowley SA, Brown M, Omenn GS, Hayes DF, Zangar RC.

J Proteome Res. 2008 Jun;7(6):2406-14. doi: 10.1021/pr700822t. Epub 2008 Apr 19.

PMID:
18422355
19.

Characterization of the mouse bronchoalveolar lavage proteome by micro-capillary LC-FTICR mass spectrometry.

Pounds JG, Flora JW, Adkins JN, Lee KM, Rana GS, Sengupta T, Smith RD, McKinney WJ.

J Chromatogr B Analyt Technol Biomed Life Sci. 2008 Mar 15;864(1-2):95-101. doi: 10.1016/j.jchromb.2008.01.044. Epub 2008 Feb 14.

PMID:
18313996
20.

Single-walled carbon nanotubes can induce pulmonary injury in mouse model.

Chou CC, Hsiao HY, Hong QS, Chen CH, Peng YW, Chen HW, Yang PC.

Nano Lett. 2008 Feb;8(2):437-45. doi: 10.1021/nl0723634. Epub 2008 Jan 29.

PMID:
18225938
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