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Items: 1 to 20 of 63


A big world inside small-world networks.

Zhang Z, Zhang J.

PLoS One. 2009 May 25;4(5):e5686. doi: 10.1371/journal.pone.0005686.


PfEMP1: an antigen that plays a key role in the pathogenicity and immune evasion of the malaria parasite Plasmodium falciparum.

Pasternak ND, Dzikowski R.

Int J Biochem Cell Biol. 2009 Jul;41(7):1463-6. doi: 10.1016/j.biocel.2008.12.012. Epub 2008 Dec 25. Review.


Questioning the ubiquity of neofunctionalization.

Gibson TA, Goldberg DS.

PLoS Comput Biol. 2009 Jan;5(1):e1000252. doi: 10.1371/journal.pcbi.1000252. Epub 2009 Jan 2.


PlasmoDraft: a database of Plasmodium falciparum gene function predictions based on postgenomic data.

Bréhélin L, Dufayard JF, Gascuel O.

BMC Bioinformatics. 2008 Oct 16;9:440. doi: 10.1186/1471-2105-9-440.


High-quality binary protein interaction map of the yeast interactome network.

Yu H, Braun P, Yildirim MA, Lemmens I, Venkatesan K, Sahalie J, Hirozane-Kishikawa T, Gebreab F, Li N, Simonis N, Hao T, Rual JF, Dricot A, Vazquez A, Murray RR, Simon C, Tardivo L, Tam S, Svrzikapa N, Fan C, de Smet AS, Motyl A, Hudson ME, Park J, Xin X, Cusick ME, Moore T, Boone C, Snyder M, Roth FP, Barabási AL, Tavernier J, Hill DE, Vidal M.

Science. 2008 Oct 3;322(5898):104-10. doi: 10.1126/science.1158684. Epub 2008 Aug 21.


Non-uniform survival rate of heterodimerization links in the evolution of the yeast protein-protein interaction network.

Hase T, Niimura Y, Kaminuma T, Tanaka H.

PLoS One. 2008 Feb 27;3(2):e1667. doi: 10.1371/journal.pone.0001667.


Cliques and duplication-divergence network growth.

Ispolatov I, Krapivsky P, Mazo I, Yuryev A.

New J Phys. 2005 Jun 17;7:145.


Protein under-wrapping causes dosage sensitivity and decreases gene duplicability.

Liang H, Plazonic KR, Chen J, Li WH, Fernández A.

PLoS Genet. 2008 Jan;4(1):e11. doi: 10.1371/journal.pgen.0040011. Epub 2007 Dec 13.


Protein-protein interaction networks and biology--what's the connection?

Hakes L, Pinney JW, Robertson DL, Lovell SC.

Nat Biotechnol. 2008 Jan;26(1):69-72. doi: 10.1038/nbt0108-69. No abstract available.


OrthoDB: the hierarchical catalog of eukaryotic orthologs.

Kriventseva EV, Rahman N, Espinosa O, Zdobnov EM.

Nucleic Acids Res. 2008 Jan;36(Database issue):D271-5. Epub 2007 Oct 18.


Clustal W and Clustal X version 2.0.

Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG.

Bioinformatics. 2007 Nov 1;23(21):2947-8. Epub 2007 Sep 10.


Natural history and evolutionary principles of gene duplication in fungi.

Wapinski I, Pfeffer A, Friedman N, Regev A.

Nature. 2007 Sep 6;449(7158):54-61.


Still stratus not altocumulus: further evidence against the date/party hub distinction.

Batada NN, Reguly T, Breitkreutz A, Boucher L, Breitkreutz BJ, Hurst LD, Tyers M.

PLoS Biol. 2007 Jun;5(6):e154. No abstract available.


In search of the biological significance of modular structures in protein networks.

Wang Z, Zhang J.

PLoS Comput Biol. 2007 Jun;3(6):e107. Epub 2007 Apr 30. Erratum in: PLoS Comput Biol. 2007 Jul;3(7):e146.


Relating tissue specialization to the differentiation of expression of singleton and duplicate mouse proteins.

Freilich S, Massingham T, Blanc E, Goldovsky L, Thornton JM.

Genome Biol. 2006;7(10):R89. Epub 2006 Oct 9.


Stratus not altocumulus: a new view of the yeast protein interaction network.

Batada NN, Reguly T, Breitkreutz A, Boucher L, Breitkreutz BJ, Hurst LD, Tyers M.

PLoS Biol. 2006 Oct;4(10):e317.


Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae.

Reguly T, Breitkreutz A, Boucher L, Breitkreutz BJ, Hon GC, Myers CL, Parsons A, Friesen H, Oughtred R, Tong A, Stark C, Ho Y, Botstein D, Andrews B, Boone C, Troyanskya OG, Ideker T, Dolinski K, Batada NN, Tyers M.

J Biol. 2006;5(4):11. Epub 2006 Jun 8.


Why do hubs tend to be essential in protein networks?

He X, Zhang J.

PLoS Genet. 2006 Jun 2;2(6):e88. Epub 2006 Apr 26.


A database and tool, IM Browser, for exploring and integrating emerging gene and protein interaction data for Drosophila.

Pacifico S, Liu G, Guest S, Parrish JR, Fotouhi F, Finley RL Jr.

BMC Bioinformatics. 2006 Apr 7;7:195.

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