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Items: 1 to 20 of 36

1.

Mammalian microRNAs predominantly act to decrease target mRNA levels.

Guo H, Ingolia NT, Weissman JS, Bartel DP.

Nature. 2010 Aug 12;466(7308):835-40. doi: 10.1038/nature09267.

2.

The landscape of C. elegans 3'UTRs.

Mangone M, Manoharan AP, Thierry-Mieg D, Thierry-Mieg J, Han T, Mackowiak SD, Mis E, Zegar C, Gutwein MR, Khivansara V, Attie O, Chen K, Salehi-Ashtiani K, Vidal M, Harkins TT, Bouffard P, Suzuki Y, Sugano S, Kohara Y, Rajewsky N, Piano F, Gunsalus KC, Kim JK.

Science. 2010 Jul 23;329(5990):432-5. doi: 10.1126/science.1191244. Epub 2010 Jun 3.

3.

Mammalian microRNAs: experimental evaluation of novel and previously annotated genes.

Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP.

Genes Dev. 2010 May 15;24(10):992-1009. doi: 10.1101/gad.1884710. Epub 2010 Apr 22.

4.

A functional human Poly(A) site requires only a potent DSE and an A-rich upstream sequence.

Nunes NM, Li W, Tian B, Furger A.

EMBO J. 2010 May 5;29(9):1523-36. doi: 10.1038/emboj.2010.42. Epub 2010 Mar 25.

5.

The microRNA miR-124 controls gene expression in the sensory nervous system of Caenorhabditis elegans.

Clark AM, Goldstein LD, Tevlin M, Tavaré S, Shaham S, Miska EA.

Nucleic Acids Res. 2010 Jun;38(11):3780-93. doi: 10.1093/nar/gkq083. Epub 2010 Feb 21.

6.

Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans.

Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW.

Nat Struct Mol Biol. 2010 Feb;17(2):173-9. doi: 10.1038/nsmb.1745. Epub 2010 Jan 10.

7.

Widespread shortening of 3'UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells.

Mayr C, Bartel DP.

Cell. 2009 Aug 21;138(4):673-84. doi: 10.1016/j.cell.2009.06.016.

8.

Progressive lengthening of 3' untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development.

Ji Z, Lee JY, Pan Z, Jiang B, Tian B.

Proc Natl Acad Sci U S A. 2009 Apr 28;106(17):7028-33. doi: 10.1073/pnas.0900028106. Epub 2009 Apr 16.

9.

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.

Langmead B, Trapnell C, Pop M, Salzberg SL.

Genome Biol. 2009;10(3):R25. doi: 10.1186/gb-2009-10-3-r25. Epub 2009 Mar 4.

10.

mRNA localization: gene expression in the spatial dimension.

Martin KC, Ephrussi A.

Cell. 2009 Feb 20;136(4):719-30. doi: 10.1016/j.cell.2009.01.044. Review.

11.

Massively parallel sequencing of the polyadenylated transcriptome of C. elegans.

Hillier LW, Reinke V, Green P, Hirst M, Marra MA, Waterston RH.

Genome Res. 2009 Apr;19(4):657-66. doi: 10.1101/gr.088112.108. Epub 2009 Jan 30.

12.

Alternative isoform regulation in human tissue transcriptomes.

Wang ET, Sandberg R, Luo S, Khrebtukova I, Zhang L, Mayr C, Kingsmore SF, Schroth GP, Burge CB.

Nature. 2008 Nov 27;456(7221):470-6. doi: 10.1038/nature07509.

13.

Most mammalian mRNAs are conserved targets of microRNAs.

Friedman RC, Farh KK, Burge CB, Bartel DP.

Genome Res. 2009 Jan;19(1):92-105. doi: 10.1101/gr.082701.108. Epub 2008 Oct 27.

14.

3' UTRs are the primary regulators of gene expression in the C. elegans germline.

Merritt C, Rasoloson D, Ko D, Seydoux G.

Curr Biol. 2008 Oct 14;18(19):1476-82. doi: 10.1016/j.cub.2008.08.013. Epub 2008 Sep 25.

15.

PRG-1 and 21U-RNAs interact to form the piRNA complex required for fertility in C. elegans.

Batista PJ, Ruby JG, Claycomb JM, Chiang R, Fahlgren N, Kasschau KD, Chaves DA, Gu W, Vasale JJ, Duan S, Conte D Jr, Luo S, Schroth GP, Carrington JC, Bartel DP, Mello CC.

Mol Cell. 2008 Jul 11;31(1):67-78. doi: 10.1016/j.molcel.2008.06.002. Epub 2008 Jun 19.

16.

Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites.

Sandberg R, Neilson JR, Sarma A, Sharp PA, Burge CB.

Science. 2008 Jun 20;320(5883):1643-7. doi: 10.1126/science.1155390.

17.

Protein factors in pre-mRNA 3'-end processing.

Mandel CR, Bai Y, Tong L.

Cell Mol Life Sci. 2008 Apr;65(7-8):1099-122. Review.

18.

Trans-splicing and operons.

Blumenthal T.

WormBook. 2005 Jun 25:1-9. Review.

19.

WormBase 2007.

Rogers A, Antoshechkin I, Bieri T, Blasiar D, Bastiani C, Canaran P, Chan J, Chen WJ, Davis P, Fernandes J, Fiedler TJ, Han M, Harris TW, Kishore R, Lee R, McKay S, Müller HM, Nakamura C, Ozersky P, Petcherski A, Schindelman G, Schwarz EM, Spooner W, Tuli MA, Van Auken K, Wang D, Wang X, Williams G, Yook K, Durbin R, Stein LD, Spieth J, Sternberg PW.

Nucleic Acids Res. 2008 Jan;36(Database issue):D612-7. Epub 2007 Nov 8.

20.

UTRome.org: a platform for 3'UTR biology in C. elegans.

Mangone M, Macmenamin P, Zegar C, Piano F, Gunsalus KC.

Nucleic Acids Res. 2008 Jan;36(Database issue):D57-62. Epub 2007 Nov 5.

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