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Results: 1 to 20 of 59

References for PMC Articles for PubMed (Select 21067574)

1.

Pyrenophora teres: profile of an increasingly damaging barley pathogen.

Liu Z, Ellwood SR, Oliver RP, Friesen TL.

Mol Plant Pathol. 2011 Jan;12(1):1-19. doi: 10.1111/j.1364-3703.2010.00649.x. Review.

PMID:
21118345
2.

Host-selective toxins, Ptr ToxA and Ptr ToxB, as necrotrophic effectors in the Pyrenophora tritici-repentis-wheat interaction.

Ciuffetti LM, Manning VA, Pandelova I, Betts MF, Martinez JP.

New Phytol. 2010 Sep;187(4):911-9. doi: 10.1111/j.1469-8137.2010.03362.x. Epub 2010 Jul 14. Review.

PMID:
20646221
3.

Pathogenicity genes of phytopathogenic fungi.

Idnurm A, Howlett BJ.

Mol Plant Pathol. 2001 Jul 1;2(4):241-55. doi: 10.1046/j.1464-6722.2001.00070.x.

PMID:
20573012
4.

Ferricrocin synthesis in Magnaporthe grisea and its role in pathogenicity in rice.

Hof C, Eisfeld K, Welzel K, Antelo L, Foster AJ, Anke H.

Mol Plant Pathol. 2007 Mar;8(2):163-72. doi: 10.1111/j.1364-3703.2007.00380.x.

PMID:
20507488
5.

De novo assembly of a 40 Mb eukaryotic genome from short sequence reads: Sordaria macrospora, a model organism for fungal morphogenesis.

Nowrousian M, Stajich JE, Chu M, Engh I, Espagne E, Halliday K, Kamerewerd J, Kempken F, Knab B, Kuo HC, Osiewacz HD, Pöggeler S, Read ND, Seiler S, Smith KM, Zickler D, Kück U, Freitag M.

PLoS Genet. 2010 Apr 8;6(4):e1000891. doi: 10.1371/journal.pgen.1000891.

6.

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium.

Ma LJ, van der Does HC, Borkovich KA, Coleman JJ, Daboussi MJ, Di Pietro A, Dufresne M, Freitag M, Grabherr M, Henrissat B, Houterman PM, Kang S, Shim WB, Woloshuk C, Xie X, Xu JR, Antoniw J, Baker SE, Bluhm BH, Breakspear A, Brown DW, Butchko RA, Chapman S, Coulson R, Coutinho PM, Danchin EG, Diener A, Gale LR, Gardiner DM, Goff S, Hammond-Kosack KE, Hilburn K, Hua-Van A, Jonkers W, Kazan K, Kodira CD, Koehrsen M, Kumar L, Lee YH, Li L, Manners JM, Miranda-Saavedra D, Mukherjee M, Park G, Park J, Park SY, Proctor RH, Regev A, Ruiz-Roldan MC, Sain D, Sakthikumar S, Sykes S, Schwartz DC, Turgeon BG, Wapinski I, Yoder O, Young S, Zeng Q, Zhou S, Galagan J, Cuomo CA, Kistler HC, Rep M.

Nature. 2010 Mar 18;464(7287):367-73. doi: 10.1038/nature08850.

7.

BEDTools: a flexible suite of utilities for comparing genomic features.

Quinlan AR, Hall IM.

Bioinformatics. 2010 Mar 15;26(6):841-2. doi: 10.1093/bioinformatics/btq033. Epub 2010 Jan 28.

8.

SnTox3 acts in effector triggered susceptibility to induce disease on wheat carrying the Snn3 gene.

Liu Z, Faris JD, Oliver RP, Tan KC, Solomon PS, McDonald MC, McDonald BA, Nunez A, Lu S, Rasmussen JB, Friesen TL.

PLoS Pathog. 2009 Sep;5(9):e1000581. doi: 10.1371/journal.ppat.1000581. Epub 2009 Sep 18.

9.

Deep proteogenomics; high throughput gene validation by multidimensional liquid chromatography and mass spectrometry of proteins from the fungal wheat pathogen Stagonospora nodorum.

Bringans S, Hane JK, Casey T, Tan KC, Lipscombe R, Solomon PS, Oliver RP.

BMC Bioinformatics. 2009 Sep 22;10:301. doi: 10.1186/1471-2105-10-301.

10.

Cytological and electrophoretic karyotyping of the chestnut blight fungus Cryphonectria parasitica.

Eusebio-Cope A, Suzuki N, Sadeghi-Garmaroodi H, Taga M.

Fungal Genet Biol. 2009 Apr;46(4):342-51. doi: 10.1016/j.fgb.2009.01.005. Epub 2009 Feb 6.

PMID:
19570503
11.

Circos: an information aesthetic for comparative genomics.

Krzywinski M, Schein J, Birol I, Connors J, Gascoyne R, Horsman D, Jones SJ, Marra MA.

Genome Res. 2009 Sep;19(9):1639-45. doi: 10.1101/gr.092759.109. Epub 2009 Jun 18.

12.

Fast and accurate short read alignment with Burrows-Wheeler transform.

Li H, Durbin R.

Bioinformatics. 2009 Jul 15;25(14):1754-60. doi: 10.1093/bioinformatics/btp324. Epub 2009 May 18.

13.

Fungal effector proteins.

Stergiopoulos I, de Wit PJ.

Annu Rev Phytopathol. 2009;47:233-63. doi: 10.1146/annurev.phyto.112408.132637. Review.

PMID:
19400631
14.

Host-selective toxins produced by Stagonospora nodorum confer disease susceptibility in adult wheat plants under field conditions.

Friesen TL, Chu CG, Liu ZH, Xu SS, Halley S, Faris JD.

Theor Appl Genet. 2009 May;118(8):1489-97. doi: 10.1007/s00122-009-0997-2. Epub 2009 Mar 6.

PMID:
19266177
15.

ABySS: a parallel assembler for short read sequence data.

Simpson JT, Wong K, Jackman SD, Schein JE, Jones SJ, Birol I.

Genome Res. 2009 Jun;19(6):1117-23. doi: 10.1101/gr.089532.108. Epub 2009 Feb 27.

16.

Development and characterization of expressed sequence tag-derived microsatellite markers for the wheat stem rust fungus Puccinia graminis f. sp. tritici.

Zhong S, Leng Y, Friesen TL, Faris JD, Szabo LJ.

Phytopathology. 2009 Mar;99(3):282-9. doi: 10.1094/PHYTO-99-3-0282.

17.

Accurate whole human genome sequencing using reversible terminator chemistry.

Bentley DR, Balasubramanian S, Swerdlow HP, Smith GP, Milton J, Brown CG, Hall KP, Evers DJ, Barnes CL, Bignell HR, Boutell JM, Bryant J, Carter RJ, Keira Cheetham R, Cox AJ, Ellis DJ, Flatbush MR, Gormley NA, Humphray SJ, Irving LJ, Karbelashvili MS, Kirk SM, Li H, Liu X, Maisinger KS, Murray LJ, Obradovic B, Ost T, Parkinson ML, Pratt MR, Rasolonjatovo IM, Reed MT, Rigatti R, Rodighiero C, Ross MT, Sabot A, Sankar SV, Scally A, Schroth GP, Smith ME, Smith VP, Spiridou A, Torrance PE, Tzonev SS, Vermaas EH, Walter K, Wu X, Zhang L, Alam MD, Anastasi C, Aniebo IC, Bailey DM, Bancarz IR, Banerjee S, Barbour SG, Baybayan PA, Benoit VA, Benson KF, Bevis C, Black PJ, Boodhun A, Brennan JS, Bridgham JA, Brown RC, Brown AA, Buermann DH, Bundu AA, Burrows JC, Carter NP, Castillo N, Chiara E Catenazzi M, Chang S, Neil Cooley R, Crake NR, Dada OO, Diakoumakos KD, Dominguez-Fernandez B, Earnshaw DJ, Egbujor UC, Elmore DW, Etchin SS, Ewan MR, Fedurco M, Fraser LJ, Fuentes Fajardo KV, Scott Furey W, George D, Gietzen KJ, Goddard CP, Golda GS, Granieri PA, Green DE, Gustafson DL, Hansen NF, Harnish K, Haudenschild CD, Heyer NI, Hims MM, Ho JT, Horgan AM, Hoschler K, Hurwitz S, Ivanov DV, Johnson MQ, James T, Huw Jones TA, Kang GD, Kerelska TH, Kersey AD, Khrebtukova I, Kindwall AP, Kingsbury Z, Kokko-Gonzales PI, Kumar A, Laurent MA, Lawley CT, Lee SE, Lee X, Liao AK, Loch JA, Lok M, Luo S, Mammen RM, Martin JW, McCauley PG, McNitt P, Mehta P, Moon KW, Mullens JW, Newington T, Ning Z, Ling Ng B, Novo SM, O'Neill MJ, Osborne MA, Osnowski A, Ostadan O, Paraschos LL, Pickering L, Pike AC, Pike AC, Chris Pinkard D, Pliskin DP, Podhasky J, Quijano VJ, Raczy C, Rae VH, Rawlings SR, Chiva Rodriguez A, Roe PM, Rogers J, Rogert Bacigalupo MC, Romanov N, Romieu A, Roth RK, Rourke NJ, Ruediger ST, Rusman E, Sanches-Kuiper RM, Schenker MR, Seoane JM, Shaw RJ, Shiver MK, Short SW, Sizto NL, Sluis JP, Smith MA, Ernest Sohna Sohna J, Spence EJ, Stevens K, Sutton N, Szajkowski L, Tregidgo CL, Turcatti G, Vandevondele S, Verhovsky Y, Virk SM, Wakelin S, Walcott GC, Wang J, Worsley GJ, Yan J, Yau L, Zuerlein M, Rogers J, Mullikin JC, Hurles ME, McCooke NJ, West JS, Oaks FL, Lundberg PL, Klenerman D, Durbin R, Smith AJ.

Nature. 2008 Nov 6;456(7218):53-9. doi: 10.1038/nature07517.

18.

Identification of Molecular Genetic Markers in Pyrenophora teres f. teres Associated with Low Virulence on 'Harbin' Barley.

Weiland JJ, Steffenson BJ, Cartwright RD, Webster RK.

Phytopathology. 1999 Feb;89(2):176-81. doi: 10.1094/PHYTO.1999.89.2.176.

19.

Proteinaceous Metabolites from Pyrenophora teres Contribute to Symptom Development of Barley Net Blotch.

Sarpeleh A, Wallwork H, Catcheside DE, Tate ME, Able AJ.

Phytopathology. 2007 Aug;97(8):907-15. doi: 10.1094/PHYTO-97-8-0907.

20.

Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training.

Ter-Hovhannisyan V, Lomsadze A, Chernoff YO, Borodovsky M.

Genome Res. 2008 Dec;18(12):1979-90. doi: 10.1101/gr.081612.108. Epub 2008 Aug 29.

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