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Items: 1 to 20 of 59

1.

RNAi in budding yeast.

Drinnenberg IA, Weinberg DE, Xie KT, Mower JP, Wolfe KH, Fink GR, Bartel DP.

Science. 2009 Oct 23;326(5952):544-50. doi: 10.1126/science.1176945. Epub 2009 Sep 10.

2.

Roles of trans and cis variation in yeast intraspecies evolution of gene expression.

Sung HM, Wang TY, Wang D, Huang YS, Wu JP, Tsai HK, Tzeng J, Huang CJ, Lee YC, Yang P, Hsu J, Chang T, Cho CY, Weng LC, Lee TC, Chang TH, Li WH, Shih MC.

Mol Biol Evol. 2009 Nov;26(11):2533-8. doi: 10.1093/molbev/msp171. Epub 2009 Jul 31.

3.

Gene expression divergence in yeast is coupled to evolution of DNA-encoded nucleosome organization.

Field Y, Fondufe-Mittendorf Y, Moore IK, Mieczkowski P, Kaplan N, Lubling Y, Lieb JD, Widom J, Segal E.

Nat Genet. 2009 Apr;41(4):438-45. doi: 10.1038/ng.324. Epub 2009 Mar 1.

4.

SMART 6: recent updates and new developments.

Letunic I, Doerks T, Bork P.

Nucleic Acids Res. 2009 Jan;37(Database issue):D229-32. doi: 10.1093/nar/gkn808. Epub 2008 Oct 31.

5.

Comparative analysis of mRNA targets for human PUF-family proteins suggests extensive interaction with the miRNA regulatory system.

Galgano A, Forrer M, Jaskiewicz L, Kanitz A, Zavolan M, Gerber AP.

PLoS One. 2008 Sep 8;3(9):e3164. doi: 10.1371/journal.pone.0003164.

6.

Relaxation of yeast mitochondrial functions after whole-genome duplication.

Jiang H, Guan W, Pinney D, Wang W, Gu Z.

Genome Res. 2008 Sep;18(9):1466-71. doi: 10.1101/gr.074674.107. Epub 2008 Jul 30.

7.

Resurrecting the role of transcription factor change in developmental evolution.

Lynch VJ, Wagner GP.

Evolution. 2008 Sep;62(9):2131-54. doi: 10.1111/j.1558-5646.2008.00440.x. Epub 2008 Jun 28. Review.

PMID:
18564379
8.

Yeast mitochondrial biogenesis: a role for the PUF RNA-binding protein Puf3p in mRNA localization.

Saint-Georges Y, Garcia M, Delaveau T, Jourdren L, Le Crom S, Lemoine S, Tanty V, Devaux F, Jacq C.

PLoS One. 2008 Jun 4;3(6):e2293. doi: 10.1371/journal.pone.0002293.

9.

The gene regulatory logic of transcription factor evolution.

Wagner GP, Lynch VJ.

Trends Ecol Evol. 2008 Jul;23(7):377-85. doi: 10.1016/j.tree.2008.03.006. Epub 2008 May 22. Review.

PMID:
18501470
10.

Ribonomic analysis of human Pum1 reveals cis-trans conservation across species despite evolution of diverse mRNA target sets.

Morris AR, Mukherjee N, Keene JD.

Mol Cell Biol. 2008 Jun;28(12):4093-103. doi: 10.1128/MCB.00155-08. Epub 2008 Apr 14.

11.

Evolution of eukaryotic transcription circuits.

Tuch BB, Li H, Johnson AD.

Science. 2008 Mar 28;319(5871):1797-9. doi: 10.1126/science.1152398.

PMID:
18369141
12.

Basis of altered RNA-binding specificity by PUF proteins revealed by crystal structures of yeast Puf4p.

Miller MT, Higgin JJ, Hall TM.

Nat Struct Mol Biol. 2008 Apr;15(4):397-402. doi: 10.1038/nsmb.1390. Epub 2008 Mar 9.

13.

The birth and death of microRNA genes in Drosophila.

Lu J, Shen Y, Wu Q, Kumar S, He B, Shi S, Carthew RW, Wang SM, Wu CI.

Nat Genet. 2008 Mar;40(3):351-5. doi: 10.1038/ng.73. Epub 2008 Feb 17.

PMID:
18278047
14.

RNA regulons: coordination of post-transcriptional events.

Keene JD.

Nat Rev Genet. 2007 Jul;8(7):533-43. Review.

PMID:
17572691
15.

The evolutionary significance of cis-regulatory mutations.

Wray GA.

Nat Rev Genet. 2007 Mar;8(3):206-16. Review.

PMID:
17304246
16.

Differential translation efficiency of orthologous genes is involved in phenotypic divergence of yeast species.

Man O, Pilpel Y.

Nat Genet. 2007 Mar;39(3):415-21. Epub 2007 Feb 4. Erratum in: Nat Genet. 2007 May;39(5):688.

PMID:
17277776
17.

Fermentative lifestyle in yeasts belonging to the Saccharomyces complex.

Merico A, Sulo P, Piskur J, Compagno C.

FEBS J. 2007 Feb;274(4):976-89. Epub 2007 Jan 18.

18.
19.

A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis.

Fitzpatrick DA, Logue ME, Stajich JE, Butler G.

BMC Evol Biol. 2006 Nov 22;6:99.

20.

Natural selection on human microRNA binding sites inferred from SNP data.

Chen K, Rajewsky N.

Nat Genet. 2006 Dec;38(12):1452-6. Epub 2006 Oct 29.

PMID:
17072316
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