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References for PMC Articles for PubMed (Select 20516137)


Elucidation of T cell signalling models.

Owens ND, Timmis J, Greensted A, Tyrrell A.

J Theor Biol. 2010 Feb 7;262(3):452-70. doi: 10.1016/j.jtbi.2009.10.017. Epub 2009 Oct 13.


The Systems Biology Graphical Notation.

Le Novère N, Hucka M, Mi H, Moodie S, Schreiber F, Sorokin A, Demir E, Wegner K, Aladjem MI, Wimalaratne SM, Bergman FT, Gauges R, Ghazal P, Kawaji H, Li L, Matsuoka Y, Villéger A, Boyd SE, Calzone L, Courtot M, Dogrusoz U, Freeman TC, Funahashi A, Ghosh S, Jouraku A, Kim S, Kolpakov F, Luna A, Sahle S, Schmidt E, Watterson S, Wu G, Goryanin I, Kell DB, Sander C, Sauro H, Snoep JL, Kohn K, Kitano H.

Nat Biotechnol. 2009 Aug;27(8):735-41. doi: 10.1038/nbt.1558. Epub 2009 Aug 7. Erratum in: Nat Biotechnol. 2009 Sep;27(9):864.


T cell antigen receptor signaling and immunological synapse stability require myosin IIA.

Ilani T, Vasiliver-Shamis G, Vardhana S, Bretscher A, Dustin ML.

Nat Immunol. 2009 May;10(5):531-9. doi: 10.1038/ni.1723. Epub 2009 Apr 6.


Complete but curtailed T-cell response to very low-affinity antigen.

Zehn D, Lee SY, Bevan MJ.

Nature. 2009 Mar 12;458(7235):211-4. doi: 10.1038/nature07657. Epub 2009 Jan 28.


Digital signaling and hysteresis characterize ras activation in lymphoid cells.

Das J, Ho M, Zikherman J, Govern C, Yang M, Weiss A, Chakraborty AK, Roose JP.

Cell. 2009 Jan 23;136(2):337-51. doi: 10.1016/j.cell.2008.11.051.


Affinity threshold for thymic selection through a T-cell receptor-co-receptor zipper.

Palmer E, Naeher D.

Nat Rev Immunol. 2009 Mar;9(3):207-13. doi: 10.1038/nri2469.


The balance between T cell receptor signaling and degradation at the center of the immunological synapse is determined by antigen quality.

Cemerski S, Das J, Giurisato E, Markiewicz MA, Allen PM, Chakraborty AK, Shaw AS.

Immunity. 2008 Sep 19;29(3):414-22. doi: 10.1016/j.immuni.2008.06.014. Epub 2008 Aug 28.


Variability and robustness in T cell activation from regulated heterogeneity in protein levels.

Feinerman O, Veiga J, Dorfman JR, Germain RN, Altan-Bonnet G.

Science. 2008 Aug 22;321(5892):1081-4. doi: 10.1126/science.1158013.


Stochastic effects and bistability in T cell receptor signaling.

Lipniacki T, Hat B, Faeder JR, Hlavacek WS.

J Theor Biol. 2008 Sep 7;254(1):110-22. doi: 10.1016/j.jtbi.2008.05.001. Epub 2008 May 10.


CD3 ITAMs count!

Malissen B.

Nat Immunol. 2008 Jun;9(6):583-4. doi: 10.1038/ni0608-583. No abstract available.


Scalable signaling mediated by T cell antigen receptor-CD3 ITAMs ensures effective negative selection and prevents autoimmunity.

Holst J, Wang H, Eder KD, Workman CJ, Boyd KL, Baquet Z, Singh H, Forbes K, Chruscinski A, Smeyne R, van Oers NS, Utz PJ, Vignali DA.

Nat Immunol. 2008 Jun;9(6):658-66. doi: 10.1038/ni.1611. Epub 2008 May 11.


Surface-anchored monomeric agonist pMHCs alone trigger TCR with high sensitivity.

Ma Z, Sharp KA, Janmey PA, Finkel TH.

PLoS Biol. 2008 Feb;6(2):e43. doi: 10.1371/journal.pbio.0060043.


T cell sensing of antigen dose governs interactive behavior with dendritic cells and sets a threshold for T cell activation.

Henrickson SE, Mempel TR, Mazo IB, Liu B, Artyomov MN, Zheng H, Peixoto A, Flynn MP, Senman B, Junt T, Wong HC, Chakraborty AK, von Andrian UH.

Nat Immunol. 2008 Mar;9(3):282-91. doi: 10.1038/ni1559. Epub 2008 Jan 20.


Purely stochastic binary decisions in cell signaling models without underlying deterministic bistabilities.

Artyomov MN, Das J, Kardar M, Chakraborty AK.

Proc Natl Acad Sci U S A. 2007 Nov 27;104(48):18958-63. Epub 2007 Nov 19.


T cell activation enhancement by endogenous pMHC acts for both weak and strong agonists but varies with differentiation state.

Yachi PP, Lotz C, Ampudia J, Gascoigne NR.

J Exp Med. 2007 Oct 29;204(11):2747-57. Epub 2007 Oct 22.


Digital NFATc2 activation per cell transforms graded T cell receptor activation into an all-or-none IL-2 expression.

Podtschaske M, Benary U, Zwinger S, Höfer T, Radbruch A, Baumgrass R.

PLoS One. 2007 Sep 26;2(9):e935.


Quantitative challenges in understanding ligand discrimination by alphabeta T cells.

Feinerman O, Germain RN, Altan-Bonnet G.

Mol Immunol. 2008 Feb;45(3):619-31. Epub 2007 Sep 6. Review. No abstract available.


A logical model provides insights into T cell receptor signaling.

Saez-Rodriguez J, Simeoni L, Lindquist JA, Hemenway R, Bommhardt U, Arndt B, Haus UU, Weismantel R, Gilles ED, Klamt S, Schraven B.

PLoS Comput Biol. 2007 Aug;3(8):e163. Epub 2007 Jul 5.


Interrogating the T cell synapse with patterned surfaces and photoactivated proteins.

DeMond AL, Groves JT.

Curr Opin Immunol. 2007 Dec;19(6):722-7. Epub 2007 Aug 20. Review.


Quantitative mass spectrometry in proteomics: a critical review.

Bantscheff M, Schirle M, Sweetman G, Rick J, Kuster B.

Anal Bioanal Chem. 2007 Oct;389(4):1017-31. Epub 2007 Aug 1. Review.

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