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Results: 1 to 20 of 30

1.

Fragile genomic sites are associated with origins of replication.

Di Rienzi SC, Collingwood D, Raghuraman MK, Brewer BJ.

Genome Biol Evol. 2009 Sep 9;1:350-63. doi: 10.1093/gbe/evp034.

PMID:
20333204
[PubMed]
Free PMC Article
2.

An oestrogen-receptor-alpha-bound human chromatin interactome.

Fullwood MJ, Liu MH, Pan YF, Liu J, Xu H, Mohamed YB, Orlov YL, Velkov S, Ho A, Mei PH, Chew EG, Huang PY, Welboren WJ, Han Y, Ooi HS, Ariyaratne PN, Vega VB, Luo Y, Tan PY, Choy PY, Wansa KD, Zhao B, Lim KS, Leow SC, Yow JS, Joseph R, Li H, Desai KV, Thomsen JS, Lee YK, Karuturi RK, Herve T, Bourque G, Stunnenberg HG, Ruan X, Cacheux-Rataboul V, Sung WK, Liu ET, Wei CL, Cheung E, Ruan Y.

Nature. 2009 Nov 5;462(7269):58-64. doi: 10.1038/nature08497.

PMID:
19890323
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Comprehensive mapping of long-range interactions reveals folding principles of the human genome.

Lieberman-Aiden E, van Berkum NL, Williams L, Imakaev M, Ragoczy T, Telling A, Amit I, Lajoie BR, Sabo PJ, Dorschner MO, Sandstrom R, Bernstein B, Bender MA, Groudine M, Gnirke A, Stamatoyannopoulos J, Mirny LA, Lander ES, Dekker J.

Science. 2009 Oct 9;326(5950):289-93. doi: 10.1126/science.1181369.

PMID:
19815776
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Nuclear neighborhoods and gene expression.

Zhao R, Bodnar MS, Spector DL.

Curr Opin Genet Dev. 2009 Apr;19(2):172-9. doi: 10.1016/j.gde.2009.02.007. Epub 2009 Mar 30. Review.

PMID:
19339170
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

ChIP-based methods for the identification of long-range chromatin interactions.

Fullwood MJ, Ruan Y.

J Cell Biochem. 2009 May 1;107(1):30-9. doi: 10.1002/jcb.22116. Review.

PMID:
19247990
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

High-resolution statistical mapping reveals gene territories in live yeast.

Berger AB, Cabal GG, Fabre E, Duong T, Buc H, Nehrbass U, Olivo-Marin JC, Gadal O, Zimmer C.

Nat Methods. 2008 Dec;5(12):1031-7. doi: 10.1038/nmeth.1266. Epub 2008 Nov 2.

PMID:
18978785
[PubMed - indexed for MEDLINE]
7.

Clustering of yeast tRNA genes is mediated by specific association of condensin with tRNA gene transcription complexes.

Haeusler RA, Pratt-Hyatt M, Good PD, Gipson TA, Engelke DR.

Genes Dev. 2008 Aug 15;22(16):2204-14. doi: 10.1101/gad.1675908.

PMID:
18708579
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Controlled exchange of chromosomal arms reveals principles driving telomere interactions in yeast.

Schober H, Kalck V, Vega-Palas MA, Van Houwe G, Sage D, Unser M, Gartenberg MR, Gasser SM.

Genome Res. 2008 Feb;18(2):261-71. Epub 2007 Dec 20.

PMID:
18096749
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

An evaluation of 3C-based methods to capture DNA interactions.

Simonis M, Kooren J, de Laat W.

Nat Methods. 2007 Nov;4(11):895-901. Review.

PMID:
17971780
[PubMed - indexed for MEDLINE]
10.

Beyond the sequence: cellular organization of genome function.

Misteli T.

Cell. 2007 Feb 23;128(4):787-800. Review.

PMID:
17320514
[PubMed - indexed for MEDLINE]
Free Article
11.

Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions.

Lanctôt C, Cheutin T, Cremer M, Cavalli G, Cremer T.

Nat Rev Genet. 2007 Feb;8(2):104-15. Review.

PMID:
17230197
[PubMed - indexed for MEDLINE]
12.

Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions.

Zhao Z, Tavoosidana G, Sjölinder M, Göndör A, Mariano P, Wang S, Kanduri C, Lezcano M, Sandhu KS, Singh U, Pant V, Tiwari V, Kurukuti S, Ohlsson R.

Nat Genet. 2006 Nov;38(11):1341-7. Epub 2006 Oct 8.

PMID:
17033624
[PubMed - indexed for MEDLINE]
13.

Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C).

Simonis M, Klous P, Splinter E, Moshkin Y, Willemsen R, de Wit E, van Steensel B, de Laat W.

Nat Genet. 2006 Nov;38(11):1348-54. Epub 2006 Oct 8.

PMID:
17033623
[PubMed - indexed for MEDLINE]
14.

Live-cell imaging reveals replication of individual replicons in eukaryotic replication factories.

Kitamura E, Blow JJ, Tanaka TU.

Cell. 2006 Jun 30;125(7):1297-308.

PMID:
16814716
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Developmentally induced changes in transcriptional program alter spatial organization across chromosomes.

Casolari JM, Brown CR, Drubin DA, Rando OJ, Silver PA.

Genes Dev. 2005 May 15;19(10):1188-98.

PMID:
15905407
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Interchromosomal associations between alternatively expressed loci.

Spilianakis CG, Lalioti MD, Town T, Lee GR, Flavell RA.

Nature. 2005 Jun 2;435(7042):637-45. Epub 2005 May 8.

PMID:
15880101
[PubMed - indexed for MEDLINE]
Free Article
17.

Chromosome looping in yeast: telomere pairing and coordinated movement reflect anchoring efficiency and territorial organization.

Bystricky K, Laroche T, van Houwe G, Blaszczyk M, Gasser SM.

J Cell Biol. 2005 Jan 31;168(3):375-87.

PMID:
15684028
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Long-range compaction and flexibility of interphase chromatin in budding yeast analyzed by high-resolution imaging techniques.

Bystricky K, Heun P, Gehlen L, Langowski J, Gasser SM.

Proc Natl Acad Sci U S A. 2004 Nov 23;101(47):16495-500. Epub 2004 Nov 15.

PMID:
15545610
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Active genes dynamically colocalize to shared sites of ongoing transcription.

Osborne CS, Chakalova L, Brown KE, Carter D, Horton A, Debrand E, Goyenechea B, Mitchell JA, Lopes S, Reik W, Fraser P.

Nat Genet. 2004 Oct;36(10):1065-71. Epub 2004 Sep 7.

PMID:
15361872
[PubMed - indexed for MEDLINE]
Free Article
20.

Interaction between differentially methylated regions partitions the imprinted genes Igf2 and H19 into parent-specific chromatin loops.

Murrell A, Heeson S, Reik W.

Nat Genet. 2004 Aug;36(8):889-93. Epub 2004 Jul 25.

PMID:
15273689
[PubMed - indexed for MEDLINE]

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