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References for PMC Articles for PubMed (Select 20433725)


Moonlighting proteins: an intriguing mode of multitasking.

Huberts DH, van der Klei IJ.

Biochim Biophys Acta. 2010 Apr;1803(4):520-5. doi: 10.1016/j.bbamcr.2010.01.022. Epub 2010 Feb 6. Review.


A galaxy of folds.

Alva V, Remmert M, Biegert A, Lupas AN, Söding J.

Protein Sci. 2010 Jan;19(1):124-30. doi: 10.1002/pro.297.


MEROPS: the peptidase database.

Rawlings ND, Barrett AJ, Bateman A.

Nucleic Acids Res. 2010 Jan;38(Database issue):D227-33. doi: 10.1093/nar/gkp971. Epub 2009 Nov 5.


Three-dimensional structural view of the central metabolic network of Thermotoga maritima.

Zhang Y, Thiele I, Weekes D, Li Z, Jaroszewski L, Ginalski K, Deacon AM, Wooley J, Lesley SA, Wilson IA, Palsson B, Osterman A, Godzik A.

Science. 2009 Sep 18;325(5947):1544-9. doi: 10.1126/science.1174671.


Discrete-continuous duality of protein structure space.

Sadreyev RI, Kim BH, Grishin NV.

Curr Opin Struct Biol. 2009 Jun;19(3):321-8. doi: 10.1016/ Epub 2009 May 29. Review.


E-zyme: predicting potential EC numbers from the chemical transformation pattern of substrate-product pairs.

Yamanishi Y, Hattori M, Kotera M, Goto S, Kanehisa M.

Bioinformatics. 2009 Jun 15;25(12):i179-86. doi: 10.1093/bioinformatics/btp223.


Scaling laws in functional genome content across prokaryotic clades and lifestyles.

Molina N, van Nimwegen E.

Trends Genet. 2009 Jun;25(6):243-7. doi: 10.1016/j.tig.2009.04.004. Epub 2009 May 18.


Lessons from structural genomics.

Terwilliger TC, Stuart D, Yokoyama S.

Annu Rev Biophys. 2009;38:371-83. doi: 10.1146/annurev.biophys.050708.133740. Review.


Moonlighting proteins--an update.

Jeffery CJ.

Mol Biosyst. 2009 Apr;5(4):345-50. doi: 10.1039/b900658n. Epub 2009 Feb 3. Review.


Structure and mechanism of a eukaryotic FMN adenylyltransferase.

Huerta C, Borek D, Machius M, Grishin NV, Zhang H.

J Mol Biol. 2009 Jun 5;389(2):388-400. doi: 10.1016/j.jmb.2009.04.022. Epub 2009 Apr 16.


Metal-MACiE: a database of metals involved in biological catalysis.

Andreini C, Bertini I, Cavallaro G, Holliday GL, Thornton JM.

Bioinformatics. 2009 Aug 15;25(16):2088-9. doi: 10.1093/bioinformatics/btp256. Epub 2009 Apr 15.


Genomic reconstruction of Shewanella oneidensis MR-1 metabolism reveals a previously uncharacterized machinery for lactate utilization.

Pinchuk GE, Rodionov DA, Yang C, Li X, Osterman AL, Dervyn E, Geydebrekht OV, Reed SB, Romine MF, Collart FR, Scott JH, Fredrickson JK, Beliaev AS.

Proc Natl Acad Sci U S A. 2009 Feb 24;106(8):2874-9. doi: 10.1073/pnas.0806798106. Epub 2009 Feb 5.


AnEnPi: identification and annotation of analogous enzymes.

Otto TD, Guimarães AC, Degrave WM, de Miranda AB.

BMC Bioinformatics. 2008 Dec 17;9:544. doi: 10.1186/1471-2105-9-544.


SUPERFAMILY--sophisticated comparative genomics, data mining, visualization and phylogeny.

Wilson D, Pethica R, Zhou Y, Talbot C, Vogel C, Madera M, Chothia C, Gough J.

Nucleic Acids Res. 2009 Jan;37(Database issue):D380-6. doi: 10.1093/nar/gkn762. Epub 2008 Nov 26.


The CATH classification revisited--architectures reviewed and new ways to characterize structural divergence in superfamilies.

Cuff AL, Sillitoe I, Lewis T, Redfern OC, Garratt R, Thornton J, Orengo CA.

Nucleic Acids Res. 2009 Jan;37(Database issue):D310-4. doi: 10.1093/nar/gkn877. Epub 2008 Nov 7.


BRENDA, AMENDA and FRENDA the enzyme information system: new content and tools in 2009.

Chang A, Scheer M, Grote A, Schomburg I, Schomburg D.

Nucleic Acids Res. 2009 Jan;37(Database issue):D588-92. doi: 10.1093/nar/gkn820. Epub 2008 Nov 4.


Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world.

Koonin EV, Wolf YI.

Nucleic Acids Res. 2008 Dec;36(21):6688-719. doi: 10.1093/nar/gkn668. Epub 2008 Oct 23. Review.


Database resources of the National Center for Biotechnology Information.

Sayers EW, Barrett T, Benson DA, Bryant SH, Canese K, Chetvernin V, Church DM, DiCuccio M, Edgar R, Federhen S, Feolo M, Geer LY, Helmberg W, Kapustin Y, Landsman D, Lipman DJ, Madden TL, Maglott DR, Miller V, Mizrachi I, Ostell J, Pruitt KD, Schuler GD, Sequeira E, Sherry ST, Shumway M, Sirotkin K, Souvorov A, Starchenko G, Tatusova TA, Wagner L, Yaschenko E, Ye J.

Nucleic Acids Res. 2009 Jan;37(Database issue):D5-15. doi: 10.1093/nar/gkn741. Epub 2008 Oct 21. Erratum in: Nucleic Acids Res. 2009 May;37(9):3124.


The Universal Protein Resource (UniProt) 2009.

UniProt Consortium.

Nucleic Acids Res. 2009 Jan;37(Database issue):D169-74. doi: 10.1093/nar/gkn664. Epub 2008 Oct 4.

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