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References for PMC Articles for PubMed (Select 20226724)


Molecular strategies for phosphorylation-mediated regulation of response regulator activity.

Gao R, Stock AM.

Curr Opin Microbiol. 2010 Apr;13(2):160-7. doi: 10.1016/j.mib.2009.12.009. Epub 2010 Jan 14. Review.


Asymmetric cross-regulation between the nitrate-responsive NarX-NarL and NarQ-NarP two-component regulatory systems from Escherichia coli K-12.

Noriega CE, Lin HY, Chen LL, Williams SB, Stewart V.

Mol Microbiol. 2010 Jan;75(2):394-412. doi: 10.1111/j.1365-2958.2009.06987.x. Epub 2009 Dec 4.


The Pfam protein families database.

Finn RD, Mistry J, Tate J, Coggill P, Heger A, Pollington JE, Gavin OL, Gunasekaran P, Ceric G, Forslund K, Holm L, Sonnhammer EL, Eddy SR, Bateman A.

Nucleic Acids Res. 2010 Jan;38(Database issue):D211-22. doi: 10.1093/nar/gkp985. Epub 2009 Nov 17.


The MiST2 database: a comprehensive genomics resource on microbial signal transduction.

Ulrich LE, Zhulin IB.

Nucleic Acids Res. 2010 Jan;38(Database issue):D401-7. doi: 10.1093/nar/gkp940. Epub 2009 Nov 9.


PDBe: Protein Data Bank in Europe.

Velankar S, Best C, Beuth B, Boutselakis CH, Cobley N, Sousa Da Silva AW, Dimitropoulos D, Golovin A, Hirshberg M, John M, Krissinel EB, Newman R, Oldfield T, Pajon A, Penkett CJ, Pineda-Castillo J, Sahni G, Sen S, Slowley R, Suarez-Uruena A, Swaminathan J, van Ginkel G, Vranken WF, Henrick K, Kleywegt GJ.

Nucleic Acids Res. 2010 Jan;38(Database issue):D308-17. doi: 10.1093/nar/gkp916. Epub 2009 Oct 25.


Structural and mechanistic determinants of c-di-GMP signalling.

Schirmer T, Jenal U.

Nat Rev Microbiol. 2009 Oct;7(10):724-35. doi: 10.1038/nrmicro2203. Review.


Receiver domains control the active-state stoichiometry of Aquifex aeolicus sigma54 activator NtrC4, as revealed by electrospray ionization mass spectrometry.

Batchelor JD, Sterling HJ, Hong E, Williams ER, Wemmer DE.

J Mol Biol. 2009 Oct 30;393(3):634-43. doi: 10.1016/j.jmb.2009.08.033. Epub 2009 Aug 21.


Determinants for the activation and autoinhibition of the diguanylate cyclase response regulator WspR.

De N, Navarro MV, Raghavan RV, Sondermann H.

J Mol Biol. 2009 Oct 30;393(3):619-33. doi: 10.1016/j.jmb.2009.08.030. Epub 2009 Aug 18.


A genome-wide compilation of the two-component systems in Lotus japonicus.

Ishida K, Niwa Y, Yamashino T, Mizuno T.

DNA Res. 2009 Aug;16(4):237-47. doi: 10.1093/dnares/dsp012.


Effects of osmolytes on the SLN1-YPD1-SSK1 phosphorelay system from Saccharomyces cerevisiae.

Kaserer AO, Andi B, Cook PF, West AH.

Biochemistry. 2009 Aug 25;48(33):8044-50. doi: 10.1021/bi900886g.


P2CS: a two-component system resource for prokaryotic signal transduction research.

Barakat M, Ortet P, Jourlin-Castelli C, Ansaldi M, Méjean V, Whitworth DE.

BMC Genomics. 2009 Jul 15;10:315. doi: 10.1186/1471-2164-10-315.


The PhyR-sigma(EcfG) signalling cascade is involved in stress response and symbiotic efficiency in Bradyrhizobium japonicum.

Gourion B, Sulser S, Frunzke J, Francez-Charlot A, Stiefel P, Pessi G, Vorholt JA, Fischer HM.

Mol Microbiol. 2009 Jul;73(2):291-305. doi: 10.1111/j.1365-2958.2009.06769.x. Epub 2009 Jun 23.


Structure and mechanism of a bacterial light-regulated cyclic nucleotide phosphodiesterase.

Barends TR, Hartmann E, Griese JJ, Beitlich T, Kirienko NV, Ryjenkov DA, Reinstein J, Shoeman RL, Gomelsky M, Schlichting I.

Nature. 2009 Jun 18;459(7249):1015-8. doi: 10.1038/nature07966.


Chemotaxis-like regulatory systems: unique roles in diverse bacteria.

Kirby JR.

Annu Rev Microbiol. 2009;63:45-59. doi: 10.1146/annurev.micro.091208.073221. Review.


Single domain response regulators: molecular switches with emerging roles in cell organization and dynamics.

Jenal U, Galperin MY.

Curr Opin Microbiol. 2009 Apr;12(2):152-60. doi: 10.1016/j.mib.2009.01.010. Epub 2009 Feb 24. Review.


Crystal structures of YkuI and its complex with second messenger cyclic Di-GMP suggest catalytic mechanism of phosphodiester bond cleavage by EAL domains.

Minasov G, Padavattan S, Shuvalova L, Brunzelle JS, Miller DJ, Baslé A, Massa C, Collart FR, Schirmer T, Anderson WF.

J Biol Chem. 2009 May 8;284(19):13174-84. doi: 10.1074/jbc.M808221200. Epub 2009 Feb 24.


Sigma factor mimicry involved in regulation of general stress response.

Francez-Charlot A, Frunzke J, Reichen C, Ebneter JZ, Gourion B, Vorholt JA.

Proc Natl Acad Sci U S A. 2009 Mar 3;106(9):3467-72. doi: 10.1073/pnas.0810291106. Epub 2009 Feb 13.


Rrp1, a cyclic-di-GMP-producing response regulator, is an important regulator of Borrelia burgdorferi core cellular functions.

Rogers EA, Terekhova D, Zhang HM, Hovis KM, Schwartz I, Marconi RT.

Mol Microbiol. 2009 Mar;71(6):1551-73. doi: 10.1111/j.1365-2958.2009.06621.x. Epub 2009 Jan 23.


Encapsulated in silica: genome, proteome and physiology of the thermophilic bacterium Anoxybacillus flavithermus WK1.

Saw JH, Mountain BW, Feng L, Omelchenko MV, Hou S, Saito JA, Stott MB, Li D, Zhao G, Wu J, Galperin MY, Koonin EV, Makarova KS, Wolf YI, Rigden DJ, Dunfield PF, Wang L, Alam M.

Genome Biol. 2008;9(11):R161. doi: 10.1186/gb-2008-9-11-r161. Epub 2008 Nov 17.


The Anaplasma phagocytophilum PleC histidine kinase and PleD diguanylate cyclase two-component system and role of cyclic Di-GMP in host cell infection.

Lai TH, Kumagai Y, Hyodo M, Hayakawa Y, Rikihisa Y.

J Bacteriol. 2009 Feb;191(3):693-700. doi: 10.1128/JB.01218-08. Epub 2008 Oct 31.

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