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Results: 1 to 20 of 55

1.

A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome.

Jiang C, Pugh BF.

Genome Biol. 2009;10(10):R109. doi: 10.1186/gb-2009-10-10-r109. Epub 2009 Oct 8.

PMID:
19814794
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Chromatin organization marks exon-intron structure.

Schwartz S, Meshorer E, Ast G.

Nat Struct Mol Biol. 2009 Sep;16(9):990-5. doi: 10.1038/nsmb.1659.

PMID:
19684600
[PubMed - indexed for MEDLINE]
3.

Nucleosome positioning as a determinant of exon recognition.

Tilgner H, Nikolaou C, Althammer S, Sammeth M, Beato M, Valcárcel J, Guigó R.

Nat Struct Mol Biol. 2009 Sep;16(9):996-1001. doi: 10.1038/nsmb.1658.

PMID:
19684599
[PubMed - indexed for MEDLINE]
4.

Mechanisms that specify promoter nucleosome location and identity.

Hartley PD, Madhani HD.

Cell. 2009 May 1;137(3):445-58. doi: 10.1016/j.cell.2009.02.043.

PMID:
19410542
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Nucleosome positioning and gene regulation: advances through genomics.

Jiang C, Pugh BF.

Nat Rev Genet. 2009 Mar;10(3):161-72. doi: 10.1038/nrg2522. Review.

PMID:
19204718
[PubMed - indexed for MEDLINE]
6.

The DNA-encoded nucleosome organization of a eukaryotic genome.

Kaplan N, Moore IK, Fondufe-Mittendorf Y, Gossett AJ, Tillo D, Field Y, LeProust EM, Hughes TR, Lieb JD, Widom J, Segal E.

Nature. 2009 Mar 19;458(7236):362-6. doi: 10.1038/nature07667. Epub 2008 Dec 17.

PMID:
19092803
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Chromatin-associated periodicity in genetic variation downstream of transcriptional start sites.

Sasaki S, Mello CC, Shimada A, Nakatani Y, Hashimoto S, Ogawa M, Matsushima K, Gu SG, Kasahara M, Ahsan B, Sasaki A, Saito T, Suzuki Y, Sugano S, Kohara Y, Takeda H, Fire A, Morishita S.

Science. 2009 Jan 16;323(5912):401-4. doi: 10.1126/science.1163183. Epub 2008 Dec 11.

PMID:
19074313
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Distinct modes of regulation by chromatin encoded through nucleosome positioning signals.

Field Y, Kaplan N, Fondufe-Mittendorf Y, Moore IK, Sharon E, Lubling Y, Widom J, Segal E.

PLoS Comput Biol. 2008 Nov;4(11):e1000216. doi: 10.1371/journal.pcbi.1000216. Epub 2008 Nov 7.

PMID:
18989395
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Combinatorial patterns of histone acetylations and methylations in the human genome.

Wang Z, Zang C, Rosenfeld JA, Schones DE, Barski A, Cuddapah S, Cui K, Roh TY, Peng W, Zhang MQ, Zhao K.

Nat Genet. 2008 Jul;40(7):897-903. doi: 10.1038/ng.154. Epub 2008 Jun 15.

PMID:
18552846
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome.

Mavrich TN, Ioshikhes IP, Venters BJ, Jiang C, Tomsho LP, Qi J, Schuster SC, Albert I, Pugh BF.

Genome Res. 2008 Jul;18(7):1073-83. doi: 10.1101/gr.078261.108. Epub 2008 Jun 12.

PMID:
18550805
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning.

Valouev A, Ichikawa J, Tonthat T, Stuart J, Ranade S, Peckham H, Zeng K, Malek JA, Costa G, McKernan K, Sidow A, Fire A, Johnson SM.

Genome Res. 2008 Jul;18(7):1051-63. doi: 10.1101/gr.076463.108. Epub 2008 May 13.

PMID:
18477713
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The transcriptional landscape of the yeast genome defined by RNA sequencing.

Nagalakshmi U, Wang Z, Waern K, Shou C, Raha D, Gerstein M, Snyder M.

Science. 2008 Jun 6;320(5881):1344-9. doi: 10.1126/science.1158441. Epub 2008 May 1.

PMID:
18451266
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Nucleosome organization in the Drosophila genome.

Mavrich TN, Jiang C, Ioshikhes IP, Li X, Venters BJ, Zanton SJ, Tomsho LP, Qi J, Glaser RL, Schuster SC, Gilmour DS, Albert I, Pugh BF.

Nature. 2008 May 15;453(7193):358-62. doi: 10.1038/nature06929. Epub 2008 Apr 13.

PMID:
18408708
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation.

Shivaswamy S, Bhinge A, Zhao Y, Jones S, Hirst M, Iyer VR.

PLoS Biol. 2008 Mar 18;6(3):e65. doi: 10.1371/journal.pbio.0060065.

PMID:
18351804
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Dynamic regulation of nucleosome positioning in the human genome.

Schones DE, Cui K, Cuddapah S, Roh TY, Barski A, Wang Z, Wei G, Zhao K.

Cell. 2008 Mar 7;132(5):887-98. doi: 10.1016/j.cell.2008.02.022.

PMID:
18329373
[PubMed - indexed for MEDLINE]
Free Article
16.

Chromatin remodelling at promoters suppresses antisense transcription.

Whitehouse I, Rando OJ, Delrow J, Tsukiyama T.

Nature. 2007 Dec 13;450(7172):1031-5.

PMID:
18075583
[PubMed - indexed for MEDLINE]
17.

Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4.

Vermeulen M, Mulder KW, Denissov S, Pijnappel WW, van Schaik FM, Varier RA, Baltissen MP, Stunnenberg HG, Mann M, Timmers HT.

Cell. 2007 Oct 5;131(1):58-69. Epub 2007 Sep 20.

PMID:
17884155
[PubMed - indexed for MEDLINE]
Free Article
18.

A high-resolution atlas of nucleosome occupancy in yeast.

Lee W, Tillo D, Bray N, Morse RH, Davis RW, Hughes TR, Nislow C.

Nat Genet. 2007 Oct;39(10):1235-44. Epub 2007 Sep 16.

PMID:
17873876
[PubMed - indexed for MEDLINE]
19.

High-resolution profiling of histone methylations in the human genome.

Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, Wei G, Chepelev I, Zhao K.

Cell. 2007 May 18;129(4):823-37.

PMID:
17512414
[PubMed - indexed for MEDLINE]
Free Article
20.

Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.

Albert I, Mavrich TN, Tomsho LP, Qi J, Zanton SJ, Schuster SC, Pugh BF.

Nature. 2007 Mar 29;446(7135):572-6.

PMID:
17392789
[PubMed - indexed for MEDLINE]

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