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Results: 1 to 20 of 57

1.

Conservation of Nef function across highly diverse lineages of SIVsmm.

Schmökel J, Li H, Bailes E, Schindler M, Silvestri G, Hahn BH, Apetrei C, Kirchhoff F.

Retrovirology. 2009 Apr 9;6:36. doi: 10.1186/1742-4690-6-36.

PMID:
19358735
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Multiple sequence alignment using ClustalW and ClustalX.

Thompson JD, Gibson TJ, Higgins DG.

Curr Protoc Bioinformatics. 2002 Aug;Chapter 2:Unit 2.3. doi: 10.1002/0471250953.bi0203s00.

PMID:
18792934
[PubMed - indexed for MEDLINE]
3.

Transmission of human immunodeficiency virus type 1 from a patient who developed AIDS to an elite suppressor.

Bailey JR, O'Connell K, Yang HC, Han Y, Xu J, Jilek B, Williams TM, Ray SC, Siliciano RF, Blankson JN.

J Virol. 2008 Aug;82(15):7395-410. doi: 10.1128/JVI.00800-08. Epub 2008 May 21.

PMID:
18495769
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Magnitude, breadth, and functional profile of T-cell responses during human immunodeficiency virus primary infection with B and BF viral variants.

Turk G, Gherardi MM, Laufer N, Saracco M, Luzzi R, Cox JH, Cahn P, Salomon H.

J Virol. 2008 Mar;82(6):2853-66. doi: 10.1128/JVI.02260-07. Epub 2008 Jan 9.

PMID:
18184702
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Evolution of HIV-1 in an HLA-B*57-positive patient during virologic escape.

Bailey JR, Zhang H, Wegweiser BW, Yang HC, Herrera L, Ahonkhai A, Williams TM, Siliciano RF, Blankson JN.

J Infect Dis. 2007 Jul 1;196(1):50-5. Epub 2007 May 17.

PMID:
17538883
[PubMed - indexed for MEDLINE]
Free Article
6.

Local structural disorder imparts plasticity on linear motifs.

Fuxreiter M, Tompa P, Simon I.

Bioinformatics. 2007 Apr 15;23(8):950-6. Epub 2007 Mar 25.

PMID:
17387114
[PubMed - indexed for MEDLINE]
Free Article
7.

Genomic analysis of HIV type 1 strains derived from a mother and child pair of long-term nonprogressors.

Reinis M, Weiser B, Kuiken C, Dong T, Lang D, Nachman S, Zhang Y, Rowland-Jones S, Burger H.

AIDS Res Hum Retroviruses. 2007 Feb;23(2):309-15.

PMID:
17331038
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

High frequency of grossly deleted nef genes in HIV-1 infected long-term slow progressors treated with Korean red ginseng.

Cho YK, Lim JY, Jung YS, Oh SK, Lee HJ, Sung H.

Curr HIV Res. 2006 Oct;4(4):447-57.

PMID:
17073619
[PubMed - indexed for MEDLINE]
9.
10.

nef gene sequence variation among HIV-1-infected African children.

Chakraborty R, Reinis M, Rostron T, Philpott S, Dong T, D'Agostino A, Musoke R, Silva E, Stumpf M, Weiser B, Burger H, Rowland-Jones SL.

HIV Med. 2006 Mar;7(2):75-84.

PMID:
16420252
[PubMed - indexed for MEDLINE]
11.

Longitudinal analysis of human immunodeficiency virus type 1 nef/long terminal repeat sequences in a cohort of long-term survivors infected from a single source.

Churchill MJ, Rhodes DI, Learmont JC, Sullivan JS, Wesselingh SL, Cooke IR, Deacon NJ, Gorry PR.

J Virol. 2006 Jan;80(2):1047-52.

PMID:
16379007
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Genetic analysis of human immunodeficiency virus type 1 nef in Portugal: subtyping, identification of mosaic genes, and amino acid sequence variability.

Parreira R, Pádua E, Piedade J, Venenno T, Paixão MT, Esteves A.

J Med Virol. 2005 Sep;77(1):8-16.

PMID:
16032733
[PubMed - indexed for MEDLINE]
13.

Identification of attenuated variants of HIV-1 circulating recombinant form 01_AE that are associated with slow disease progression due to gross genetic alterations in the nef/long terminal repeat sequences.

Kondo M, Shima T, Nishizawa M, Sudo K, Iwamuro S, Okabe T, Takebe Y, Imai M.

J Infect Dis. 2005 Jul 1;192(1):56-61. Epub 2005 May 25.

PMID:
15942894
[PubMed - indexed for MEDLINE]
Free Article
14.

MUSCLE: a multiple sequence alignment method with reduced time and space complexity.

Edgar RC.

BMC Bioinformatics. 2004 Aug 19;5:113.

PMID:
15318951
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Long-term survivors in Nairobi: complete HIV-1 RNA sequences and immunogenetic associations.

Fang G, Kuiken C, Weiser B, Rowland-Jones S, Plummer F, Chen CH, Kaul R, Anzala AO, Bwayo J, Kimani J, Philpott SM, Kitchen C, Sinsheimer JS, Gaschen B, Lang D, Shi B, Kemal KS, Rostron T, Brunner C, Beddows S, Sattenau Q, Paxinos E, Oyugi J, Burger H.

J Infect Dis. 2004 Aug 15;190(4):697-701. Epub 2004 Jul 13.

PMID:
15272396
[PubMed - indexed for MEDLINE]
Free Article
16.

ARF1 regulates Nef-induced CD4 degradation.

Fauré J, Stalder R, Borel C, Sobo K, Piguet V, Demaurex N, Gruenberg J, Trono D.

Curr Biol. 2004 Jun 22;14(12):1056-64.

PMID:
15202998
[PubMed - indexed for MEDLINE]
Free Article
17.

Nef proteins from simian immunodeficiency virus-infected chimpanzees interact with p21-activated kinase 2 and modulate cell surface expression of various human receptors.

Kirchhoff F, Schindler M, Bailer N, Renkema GH, Saksela K, Knoop V, Müller-Trutwin MC, Santiago ML, Bibollet-Ruche F, Dittmar MT, Heeney JL, Hahn BH, Münch J.

J Virol. 2004 Jul;78(13):6864-74.

PMID:
15194762
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Differences in disease progression in a cohort of long-term non-progressors after more than 16 years of HIV-1 infection.

Rodés B, Toro C, Paxinos E, Poveda E, Martinez-Padial M, Benito JM, Jimenez V, Wrin T, Bassani S, Soriano V.

AIDS. 2004 May 21;18(8):1109-16.

PMID:
15166526
[PubMed - indexed for MEDLINE]
19.

MUSCLE: multiple sequence alignment with high accuracy and high throughput.

Edgar RC.

Nucleic Acids Res. 2004 Mar 19;32(5):1792-7. Print 2004.

PMID:
15034147
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

First demonstration of a lack of viral sequence evolution in a nonprogressor, defining replication-incompetent HIV-1 infection.

Wang B, Mikhail M, Dyer WB, Zaunders JJ, Kelleher AD, Saksena NK.

Virology. 2003 Jul 20;312(1):135-50.

PMID:
12890627
[PubMed - indexed for MEDLINE]
Free Article

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