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Results: 9

1.

A core gut microbiome in obese and lean twins.

Turnbaugh PJ, Hamady M, Yatsunenko T, Cantarel BL, Duncan A, Ley RE, Sogin ML, Jones WJ, Roe BA, Affourtit JP, Egholm M, Henrissat B, Heath AC, Knight R, Gordon JI.

Nature. 2009 Jan 22;457(7228):480-4. doi: 10.1038/nature07540. Epub 2008 Nov 30.

PMID:
19043404
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

SMART 6: recent updates and new developments.

Letunic I, Doerks T, Bork P.

Nucleic Acids Res. 2009 Jan;37(Database issue):D229-32. doi: 10.1093/nar/gkn808. Epub 2008 Oct 31.

PMID:
18978020
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Probing metagenomics by rapid cluster analysis of very large datasets.

Li W, Wooley JC, Godzik A.

PLoS One. 2008;3(10):e3375. doi: 10.1371/journal.pone.0003375. Epub 2008 Oct 10.

PMID:
18846219
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering.

Yooseph S, Li W, Sutton G.

BMC Bioinformatics. 2008 Apr 10;9:182. doi: 10.1186/1471-2105-9-182.

PMID:
18402669
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

UniRef: comprehensive and non-redundant UniProt reference clusters.

Suzek BE, Huang H, McGarvey P, Mazumder R, Wu CH.

Bioinformatics. 2007 May 15;23(10):1282-8. Epub 2007 Mar 22.

PMID:
17379688
[PubMed - indexed for MEDLINE]
Free Article
6.

The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families.

Yooseph S, Sutton G, Rusch DB, Halpern AL, Williamson SJ, Remington K, Eisen JA, Heidelberg KB, Manning G, Li W, Jaroszewski L, Cieplak P, Miller CS, Li H, Mashiyama ST, Joachimiak MP, van Belle C, Chandonia JM, Soergel DA, Zhai Y, Natarajan K, Lee S, Raphael BJ, Bafna V, Friedman R, Brenner SE, Godzik A, Eisenberg D, Dixon JE, Taylor SS, Strausberg RL, Frazier M, Venter JC.

PLoS Biol. 2007 Mar;5(3):e16.

PMID:
17355171
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences.

Li W, Godzik A.

Bioinformatics. 2006 Jul 1;22(13):1658-9. Epub 2006 May 26.

PMID:
16731699
[PubMed - indexed for MEDLINE]
Free Article
8.

Tolerating some redundancy significantly speeds up clustering of large protein databases.

Li W, Jaroszewski L, Godzik A.

Bioinformatics. 2002 Jan;18(1):77-82.

PMID:
11836214
[PubMed - indexed for MEDLINE]
Free Article
9.

Clustering of highly homologous sequences to reduce the size of large protein databases.

Li W, Jaroszewski L, Godzik A.

Bioinformatics. 2001 Mar;17(3):282-3.

PMID:
11294794
[PubMed - indexed for MEDLINE]
Free Article

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