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Items: 1 to 20 of 25

1.

FlyBase: enhancing Drosophila Gene Ontology annotations.

Tweedie S, Ashburner M, Falls K, Leyland P, McQuilton P, Marygold S, Millburn G, Osumi-Sutherland D, Schroeder A, Seal R, Zhang H; FlyBase Consortium.

Nucleic Acids Res. 2009 Jan;37(Database issue):D555-9. doi: 10.1093/nar/gkn788. Epub 2008 Oct 23.

2.

Correlation between the secondary structure of pre-mRNA introns and the efficiency of splicing in Saccharomyces cerevisiae.

Rogic S, Montpetit B, Hoos HH, Mackworth AK, Ouellette BF, Hieter P.

BMC Genomics. 2008 Jul 29;9:355. doi: 10.1186/1471-2164-9-355.

3.

Genomic mid-range inhomogeneity correlates with an abundance of RNA secondary structures.

Bechtel JM, Wittenschlaeger T, Dwyer T, Song J, Arunachalam S, Ramakrishnan SK, Shepard S, Fedorov A.

BMC Genomics. 2008 Jun 12;9:284. doi: 10.1186/1471-2164-9-284.

4.

Folding of group II introns: a model system for large, multidomain RNAs?

Pyle AM, Fedorova O, Waldsich C.

Trends Biochem Sci. 2007 Mar;32(3):138-45. Epub 2007 Feb 7. Review. Erratum in: Trends Biochem Sci. 2007 Jun;32(6):251.

PMID:
17289393
5.

Advances in the Exon-Intron Database (EID).

Shepelev V, Fedorov A.

Brief Bioinform. 2006 Jun;7(2):178-85. Epub 2006 Mar 9. Review.

7.

The evolution of spliceosomal introns: patterns, puzzles and progress.

Roy SW, Gilbert W.

Nat Rev Genet. 2006 Mar;7(3):211-21. Review.

PMID:
16485020
8.

The rise and falls of introns.

Belshaw R, Bensasson D.

Heredity (Edinb). 2006 Mar;96(3):208-13. Review.

9.

Atomic level architecture of group I introns revealed.

Vicens Q, Cech TR.

Trends Biochem Sci. 2006 Jan;31(1):41-51. Epub 2005 Dec 13. Review.

PMID:
16356725
10.

Analysis of evolution of exon-intron structure of eukaryotic genes.

Rogozin IB, Sverdlov AV, Babenko VN, Koonin EV.

Brief Bioinform. 2005 Jun;6(2):118-34. Review.

11.

Subdivision of large introns in Drosophila by recursive splicing at nonexonic elements.

Burnette JM, Miyamoto-Sato E, Schaub MA, Conklin J, Lopez AJ.

Genetics. 2005 Jun;170(2):661-74. Epub 2005 Mar 31.

12.

Predicting a set of minimal free energy RNA secondary structures common to two sequences.

Mathews DH.

Bioinformatics. 2005 May 15;21(10):2246-53. Epub 2005 Feb 24.

13.

Introns: mighty elements from the RNA world.

Fedorov A, Fedorova L.

J Mol Evol. 2004 Nov;59(5):718-21.

PMID:
15693628
14.

Complex spliceosomal organization ancestral to extant eukaryotes.

Collins L, Penny D.

Mol Biol Evol. 2005 Apr;22(4):1053-66. Epub 2005 Jan 19.

15.

Influence of RNA secondary structure on the pre-mRNA splicing process.

Buratti E, Baralle FE.

Mol Cell Biol. 2004 Dec;24(24):10505-14. Review. No abstract available.

16.
17.

The contribution of RNAs and retroposition to evolutionary novelties.

Brosius J.

Genetica. 2003 Jul;118(2-3):99-116. Review.

PMID:
12868601
18.

Vienna RNA secondary structure server.

Hofacker IL.

Nucleic Acids Res. 2003 Jul 1;31(13):3429-31.

19.

Intrasplicing--analysis of long intron sequences.

Ott S, Tamada Y, Bannai H, Nakai K, Miyano S.

Pac Symp Biocomput. 2003:339-50.

20.

Database for mobile group II introns.

Dai L, Toor N, Olson R, Keeping A, Zimmerly S.

Nucleic Acids Res. 2003 Jan 1;31(1):424-6.

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