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Results: 1 to 20 of 39

References for PMC Articles for PubMed (Select 19855824)

1.

Mixed infection and the genesis of influenza virus diversity.

Ghedin E, Fitch A, Boyne A, Griesemer S, DePasse J, Bera J, Zhang X, Halpin RA, Smit M, Jennings L, St George K, Holmes EC, Spiro DJ.

J Virol. 2009 Sep;83(17):8832-41. doi: 10.1128/JVI.00773-09. Epub 2009 Jun 24.

2.

Emergence of a novel swine-origin influenza A (H1N1) virus in humans.

Novel Swine-Origin Influenza A (H1N1) Virus Investigation Team, Dawood FS, Jain S, Finelli L, Shaw MW, Lindstrom S, Garten RJ, Gubareva LV, Xu X, Bridges CB, Uyeki TM.

N Engl J Med. 2009 Jun 18;360(25):2605-15. doi: 10.1056/NEJMoa0903810. Epub 2009 May 7. Erratum in: N Engl J Med. 2009 Jul 2;361(1):102.

3.

Many-core algorithms for statistical phylogenetics.

Suchard MA, Rambaut A.

Bioinformatics. 2009 Jun 1;25(11):1370-6. doi: 10.1093/bioinformatics/btp244. Epub 2009 Apr 15.

4.

Sequencing and analyses of all known human rhinovirus genomes reveal structure and evolution.

Palmenberg AC, Spiro D, Kuzmickas R, Wang S, Djikeng A, Rathe JA, Fraser-Liggett CM, Liggett SB.

Science. 2009 Apr 3;324(5923):55-9. doi: 10.1126/science.1165557. Epub 2009 Feb 12.

5.

Microbe hunting in the 21st century.

Lipkin WI.

Proc Natl Acad Sci U S A. 2009 Jan 6;106(1):6-7. doi: 10.1073/pnas.0811420106. Epub 2008 Dec 31. No abstract available.

6.

Evolutionary history and phylogeography of human viruses.

Holmes EC.

Annu Rev Microbiol. 2008;62:307-28. doi: 10.1146/annurev.micro.62.081307.162912. Review.

PMID:
18785840
7.

Cross-species virus transmission and the emergence of new epidemic diseases.

Parrish CR, Holmes EC, Morens DM, Park EC, Burke DS, Calisher CH, Laughlin CA, Saif LJ, Daszak P.

Microbiol Mol Biol Rev. 2008 Sep;72(3):457-70. doi: 10.1128/MMBR.00004-08. Review.

8.

Within-host genetic diversity of endemic and emerging parvoviruses of dogs and cats.

Hoelzer K, Shackelton LA, Holmes EC, Parrish CR.

J Virol. 2008 Nov;82(22):11096-105. doi: 10.1128/JVI.01003-08. Epub 2008 Sep 3.

9.

Molecular epidemiology of A/H3N2 and A/H1N1 influenza virus during a single epidemic season in the United States.

Nelson MI, Edelman L, Spiro DJ, Boyne AR, Bera J, Halpin R, Sengamalay N, Ghedin E, Miller MA, Simonsen L, Viboud C, Holmes EC.

PLoS Pathog. 2008 Aug 22;4(8):e1000133. doi: 10.1371/journal.ppat.1000133. Erratum in: PLoS Pathog. 2008 Dec;4(12). doi.org//10.1371/annotation/1391941e-93d3-48d3-8c9a-b7c6d98f9527.. Sengamalay, Naomi [added].

10.

Understanding individual human mobility patterns.

González MC, Hidalgo CA, Barabási AL.

Nature. 2008 Jun 5;453(7196):779-82. doi: 10.1038/nature06958.

PMID:
18528393
11.

Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection.

Keele BF, Giorgi EE, Salazar-Gonzalez JF, Decker JM, Pham KT, Salazar MG, Sun C, Grayson T, Wang S, Li H, Wei X, Jiang C, Kirchherr JL, Gao F, Anderson JA, Ping LH, Swanstrom R, Tomaras GD, Blattner WA, Goepfert PA, Kilby JM, Saag MS, Delwart EL, Busch MP, Cohen MS, Montefiori DC, Haynes BF, Gaschen B, Athreya GS, Lee HY, Wood N, Seoighe C, Perelson AS, Bhattacharya T, Korber BT, Hahn BH, Shaw GM.

Proc Natl Acad Sci U S A. 2008 May 27;105(21):7552-7. doi: 10.1073/pnas.0802203105. Epub 2008 May 19.

12.

Transmission pathways of foot-and-mouth disease virus in the United Kingdom in 2007.

Cottam EM, Wadsworth J, Shaw AE, Rowlands RJ, Goatley L, Maan S, Maan NS, Mertens PP, Ebert K, Li Y, Ryan ED, Juleff N, Ferris NP, Wilesmith JW, Haydon DT, King DP, Paton DJ, Knowles NJ.

PLoS Pathog. 2008 Apr 18;4(4):e1000050. doi: 10.1371/journal.ppat.1000050.

13.

The global circulation of seasonal influenza A (H3N2) viruses.

Russell CA, Jones TC, Barr IG, Cox NJ, Garten RJ, Gregory V, Gust ID, Hampson AW, Hay AJ, Hurt AC, de Jong JC, Kelso A, Klimov AI, Kageyama T, Komadina N, Lapedes AS, Lin YP, Mosterin A, Obuchi M, Odagiri T, Osterhaus AD, Rimmelzwaan GF, Shaw MW, Skepner E, Stohr K, Tashiro M, Fouchier RA, Smith DJ.

Science. 2008 Apr 18;320(5874):340-6. doi: 10.1126/science.1154137.

14.

The genomic and epidemiological dynamics of human influenza A virus.

Rambaut A, Pybus OG, Nelson MI, Viboud C, Taubenberger JK, Holmes EC.

Nature. 2008 May 29;453(7195):615-9. doi: 10.1038/nature06945. Epub 2008 Apr 16.

15.

Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics.

Minin VN, Bloomquist EW, Suchard MA.

Mol Biol Evol. 2008 Jul;25(7):1459-71. doi: 10.1093/molbev/msn090. Epub 2008 Apr 11.

16.

Metagenomic analysis of human diarrhea: viral detection and discovery.

Finkbeiner SR, Allred AF, Tarr PI, Klein EJ, Kirkwood CD, Wang D.

PLoS Pathog. 2008 Feb 29;4(2):e1000011. doi: 10.1371/journal.ppat.1000011.

17.

A new arenavirus in a cluster of fatal transplant-associated diseases.

Palacios G, Druce J, Du L, Tran T, Birch C, Briese T, Conlan S, Quan PL, Hui J, Marshall J, Simons JF, Egholm M, Paddock CD, Shieh WJ, Goldsmith CS, Zaki SR, Catton M, Lipkin WI.

N Engl J Med. 2008 Mar 6;358(10):991-8. doi: 10.1056/NEJMoa073785. Epub 2008 Feb 6. Erratum in: N Engl J Med. 2008 Mar 13;358(11):1204.

18.

Viral evolution in the genomic age.

Holmes EC.

PLoS Biol. 2007 Oct 2;5(10):e278. No abstract available.

19.

A metagenomic survey of microbes in honey bee colony collapse disorder.

Cox-Foster DL, Conlan S, Holmes EC, Palacios G, Evans JD, Moran NA, Quan PL, Briese T, Hornig M, Geiser DM, Martinson V, vanEngelsdorp D, Kalkstein AL, Drysdale A, Hui J, Zhai J, Cui L, Hutchison SK, Simons JF, Egholm M, Pettis JS, Lipkin WI.

Science. 2007 Oct 12;318(5848):283-7. Epub 2007 Sep 6.

20.

The generation of influenza outbreaks by a network of host immune responses against a limited set of antigenic types.

Recker M, Pybus OG, Nee S, Gupta S.

Proc Natl Acad Sci U S A. 2007 May 1;104(18):7711-6. Epub 2007 Apr 25.

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