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Results: 1 to 20 of 31

1.

Spectroscopic studies of position-specific DNA "breathing" fluctuations at replication forks and primer-template junctions.

Jose D, Datta K, Johnson NP, von Hippel PH.

Proc Natl Acad Sci U S A. 2009 Mar 17;106(11):4231-6. doi: 10.1073/pnas.0900803106. Epub 2009 Feb 25.

PMID:
19246398
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Counting RAD51 proteins disassembling from nucleoprotein filaments under tension.

van Mameren J, Modesti M, Kanaar R, Wyman C, Peterman EJ, Wuite GJ.

Nature. 2009 Feb 5;457(7230):745-8. doi: 10.1038/nature07581. Epub 2008 Dec 7.

PMID:
19060884
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

DNA overstretching in the presence of glyoxal: structural evidence of force-induced DNA melting.

Shokri L, McCauley MJ, Rouzina I, Williams MC.

Biophys J. 2008 Aug;95(3):1248-55. doi: 10.1529/biophysj.108.132688. Epub 2008 Apr 18.

PMID:
18424499
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Visualizing single DNA-bound proteins using DNA as a scanning probe.

Noom MC, van den Broek B, van Mameren J, Wuite GJ.

Nat Methods. 2007 Dec;4(12):1031-6. Epub 2007 Nov 11.

PMID:
17994031
[PubMed - indexed for MEDLINE]
5.

Structure and energy of a DNA dodecamer under tensile load.

Piana S.

Nucleic Acids Res. 2005 Dec 14;33(22):7029-38. Print 2005.

PMID:
16356925
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Mapping the phase diagram of single DNA molecule force-induced melting in the presence of ethidium.

Vladescu ID, McCauley MJ, Rouzina I, Williams MC.

Phys Rev Lett. 2005 Oct 7;95(15):158102. Epub 2005 Oct 6.

PMID:
16241765
[PubMed - indexed for MEDLINE]
7.

DNA-tension dependence of restriction enzyme activity reveals mechanochemical properties of the reaction pathway.

van den Broek B, Noom MC, Wuite GJ.

Nucleic Acids Res. 2005 May 10;33(8):2676-84. Print 2005.

PMID:
15886396
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Overstretching and force-driven strand separation of double-helix DNA.

Cocco S, Yan J, L├ęger JF, Chatenay D, Marko JF.

Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Jul;70(1 Pt 1):011910. Epub 2004 Jul 20.

PMID:
15324091
[PubMed - indexed for MEDLINE]
9.

Bubble nucleation and cooperativity in DNA melting.

Zeng Y, Montrichok A, Zocchi G.

J Mol Biol. 2004 May 21;339(1):67-75.

PMID:
15123421
[PubMed - indexed for MEDLINE]
10.

Mechanical measurement of single-molecule binding rates: kinetics of DNA helix-destabilization by T4 gene 32 protein.

Pant K, Karpel RL, Rouzina I, Williams MC.

J Mol Biol. 2004 Feb 27;336(4):851-70.

PMID:
15095865
[PubMed - indexed for MEDLINE]
11.

Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid.

WATSON JD, CRICK FH.

Nature. 1953 Apr 25;171(4356):737-8. No abstract available.

PMID:
13054692
[PubMed - indexed for MEDLINE]
12.

TWINKLE Has 5' -> 3' DNA helicase activity and is specifically stimulated by mitochondrial single-stranded DNA-binding protein.

Korhonen JA, Gaspari M, Falkenberg M.

J Biol Chem. 2003 Dec 5;278(49):48627-32. Epub 2003 Sep 15.

PMID:
12975372
[PubMed - indexed for MEDLINE]
Free Article
13.

Structural transitions and elasticity from torque measurements on DNA.

Bryant Z, Stone MD, Gore J, Smith SB, Cozzarelli NR, Bustamante C.

Nature. 2003 Jul 17;424(6946):338-41.

PMID:
12867987
[PubMed - indexed for MEDLINE]
14.

Kinetic regulation of single DNA molecule denaturation by T4 gene 32 protein structural domains.

Pant K, Karpel RL, Williams MC.

J Mol Biol. 2003 Mar 28;327(3):571-8.

PMID:
12634053
[PubMed - indexed for MEDLINE]
15.

Salt dependence of the elasticity and overstretching transition of single DNA molecules.

Wenner JR, Williams MC, Rouzina I, Bloomfield VA.

Biophys J. 2002 Jun;82(6):3160-9.

PMID:
12023240
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Entropy and heat capacity of DNA melting from temperature dependence of single molecule stretching.

Williams MC, Wenner JR, Rouzina I, Bloomfield VA.

Biophys J. 2001 Apr;80(4):1932-9.

PMID:
11259306
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Force-induced melting of the DNA double helix. 2. Effect of solution conditions.

Rouzina I, Bloomfield VA.

Biophys J. 2001 Feb;80(2):894-900.

PMID:
11159456
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Force-induced melting of the DNA double helix 1. Thermodynamic analysis.

Rouzina I, Bloomfield VA.

Biophys J. 2001 Feb;80(2):882-93.

PMID:
11159455
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Effect of pH on the overstretching transition of double-stranded DNA: evidence of force-induced DNA melting.

Williams MC, Wenner JR, Rouzina I, Bloomfield VA.

Biophys J. 2001 Feb;80(2):874-81.

PMID:
11159454
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Sequence-dependent mechanics of single DNA molecules.

Rief M, Clausen-Schaumann H, Gaub HE.

Nat Struct Biol. 1999 Apr;6(4):346-9.

PMID:
10201403
[PubMed - indexed for MEDLINE]

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