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Results: 1 to 20 of 57

2.

Analysis of gene expression data using BRB-ArrayTools.

Simon R, Lam A, Li MC, Ngan M, Menenzes S, Zhao Y.

Cancer Inform. 2007 Feb 4;3:11-7.

PMID:
19455231
[PubMed]
Free PMC Article
3.

The use of genomics in clinical trial design.

Simon R.

Clin Cancer Res. 2008 Oct 1;14(19):5984-93. doi: 10.1158/1078-0432.CCR-07-4531. Review.

PMID:
18829477
[PubMed - indexed for MEDLINE]
Free Article
4.

Gene Set Expression Comparison kit for BRB-ArrayTools.

Xu X, Zhao Y, Simon R.

Bioinformatics. 2008 Jan 1;24(1):137-9. Epub 2007 Nov 15.

PMID:
18006549
[PubMed - indexed for MEDLINE]
Free Article
5.

Is there an alternative to increasing the sample size in microarray studies?

Klebanov L, Yakovlev A.

Bioinformation. 2007 Apr 10;1(10):429-31.

PMID:
17597934
[PubMed]
Free PMC Article
6.

Critical review of published microarray studies for cancer outcome and guidelines on statistical analysis and reporting.

Dupuy A, Simon RM.

J Natl Cancer Inst. 2007 Jan 17;99(2):147-57. Review.

PMID:
17227998
[PubMed - indexed for MEDLINE]
Free Article
7.

Gene signature evaluation as a prognostic tool: challenges in the design of the MINDACT trial.

Bogaerts J, Cardoso F, Buyse M, Braga S, Loi S, Harrison JA, Bines J, Mook S, Decker N, Ravdin P, Therasse P, Rutgers E, van 't Veer LJ, Piccart M; TRANSBIG consortium.

Nat Clin Pract Oncol. 2006 Oct;3(10):540-51. Review.

PMID:
17019432
[PubMed - indexed for MEDLINE]
8.

A comparison of univariate and multivariate gene selection techniques for classification of cancer datasets.

Lai C, Reinders MJ, van't Veer LJ, Wessels LF.

BMC Bioinformatics. 2006 May 2;7:235.

PMID:
16670007
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Sample size planning for developing classifiers using high-dimensional DNA microarray data.

Dobbin KK, Simon RM.

Biostatistics. 2007 Jan;8(1):101-17. Epub 2006 Apr 13.

PMID:
16613833
[PubMed - indexed for MEDLINE]
Free Article
10.

Use of genomic signatures in therapeutics development in oncology and other diseases.

Simon R, Wang SJ.

Pharmacogenomics J. 2006 May-Jun;6(3):166-73.

PMID:
16415922
[PubMed - indexed for MEDLINE]
11.

Comparison of Affymetrix GeneChip expression measures.

Irizarry RA, Wu Z, Jaffee HA.

Bioinformatics. 2006 Apr 1;22(7):789-94. Epub 2006 Jan 12.

PMID:
16410320
[PubMed - indexed for MEDLINE]
Free Article
12.

EDGE: extraction and analysis of differential gene expression.

Leek JT, Monsen E, Dabney AR, Storey JD.

Bioinformatics. 2006 Feb 15;22(4):507-8. Epub 2005 Dec 15. Erratum in: Bioinformatics. 2006 Jun 1;22(11):1412.

PMID:
16357033
[PubMed - indexed for MEDLINE]
Free Article
13.

When is a genomic classifier ready for prime time?

Simon R.

Nat Clin Pract Oncol. 2004 Nov;1(1):4-5. Review. No abstract available.

PMID:
16264774
[PubMed - indexed for MEDLINE]
14.

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, Paulovich A, Pomeroy SL, Golub TR, Lander ES, Mesirov JP.

Proc Natl Acad Sci U S A. 2005 Oct 25;102(43):15545-50. Epub 2005 Sep 30.

PMID:
16199517
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Discovering statistically significant pathways in expression profiling studies.

Tian L, Greenberg SA, Kong SW, Altschuler J, Kohane IS, Park PJ.

Proc Natl Acad Sci U S A. 2005 Sep 20;102(38):13544-9. Epub 2005 Sep 8.

PMID:
16174746
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Roadmap for developing and validating therapeutically relevant genomic classifiers.

Simon R.

J Clin Oncol. 2005 Oct 10;23(29):7332-41. Epub 2005 Sep 6. Review.

PMID:
16145063
[PubMed - indexed for MEDLINE]
17.

Gene expression patterns and profile changes pre- and post-erlotinib treatment in patients with metastatic breast cancer.

Yang SX, Simon RM, Tan AR, Nguyen D, Swain SM.

Clin Cancer Res. 2005 Sep 1;11(17):6226-32.

PMID:
16144925
[PubMed - indexed for MEDLINE]
Free Article
18.

Significance analysis of time course microarray experiments.

Storey JD, Xiao W, Leek JT, Tompkins RG, Davis RW.

Proc Natl Acad Sci U S A. 2005 Sep 6;102(36):12837-42. Epub 2005 Sep 2.

PMID:
16141318
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Development and validation of therapeutically relevant multi-gene biomarker classifiers.

Simon R.

J Natl Cancer Inst. 2005 Jun 15;97(12):866-7. No abstract available.

PMID:
15956642
[PubMed - indexed for MEDLINE]
Free Article
20.

Prediction error estimation: a comparison of resampling methods.

Molinaro AM, Simon R, Pfeiffer RM.

Bioinformatics. 2005 Aug 1;21(15):3301-7. Epub 2005 May 19.

PMID:
15905277
[PubMed - indexed for MEDLINE]
Free Article

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