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Results: 1 to 20 of 47

References for PMC Articles for PubMed (Select 19661910)

1.

Influence of nucleotide identity on ribose 2'-hydroxyl reactivity in RNA.

Wilkinson KA, Vasa SM, Deigan KE, Mortimer SA, Giddings MC, Weeks KM.

RNA. 2009 Jul;15(7):1314-21. doi: 10.1261/rna.1536209. Epub 2009 May 20.

2.

Accurate SHAPE-directed RNA structure determination.

Deigan KE, Li TW, Mathews DH, Weeks KM.

Proc Natl Acad Sci U S A. 2009 Jan 6;106(1):97-102. doi: 10.1073/pnas.0806929106. Epub 2008 Dec 24.

3.

A pause for thought along the co-translational folding pathway.

Komar AA.

Trends Biochem Sci. 2009 Jan;34(1):16-24. doi: 10.1016/j.tibs.2008.10.002. Epub 2008 Nov 6. Review.

PMID:
18996013
4.

ShapeFinder: a software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis.

Vasa SM, Guex N, Wilkinson KA, Weeks KM, Giddings MC.

RNA. 2008 Oct;14(10):1979-90. doi: 10.1261/rna.1166808. Epub 2008 Sep 4.

5.

Strong correlation between SHAPE chemistry and the generalized NMR order parameter (S2) in RNA.

Gherghe CM, Shajani Z, Wilkinson KA, Varani G, Weeks KM.

J Am Chem Soc. 2008 Sep 17;130(37):12244-5. doi: 10.1021/ja804541s. Epub 2008 Aug 19.

6.

RNALogo: a new approach to display structural RNA alignment.

Chang TH, Horng JT, Huang HD.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W91-6. doi: 10.1093/nar/gkn258. Epub 2008 May 21.

7.

High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states.

Wilkinson KA, Gorelick RJ, Vasa SM, Guex N, Rein A, Mathews DH, Giddings MC, Weeks KM.

PLoS Biol. 2008 Apr 29;6(4):e96. doi: 10.1371/journal.pbio.0060096.

8.

Following translation by single ribosomes one codon at a time.

Wen JD, Lancaster L, Hodges C, Zeri AC, Yoshimura SH, Noller HF, Bustamante C, Tinoco I.

Nature. 2008 Apr 3;452(7187):598-603. doi: 10.1038/nature06716. Epub 2008 Mar 9.

9.

Recombination confounds the early evolutionary history of human immunodeficiency virus type 1: subtype G is a circulating recombinant form.

Abecasis AB, Lemey P, Vidal N, de Oliveira T, Peeters M, Camacho R, Shapiro B, Rambaut A, Vandamme AM.

J Virol. 2007 Aug;81(16):8543-51. Epub 2007 Jun 6.

11.

A fast-acting reagent for accurate analysis of RNA secondary and tertiary structure by SHAPE chemistry.

Mortimer SA, Weeks KM.

J Am Chem Soc. 2007 Apr 11;129(14):4144-5. Epub 2007 Mar 17. No abstract available.

PMID:
17367143
12.

Host factors exploited by retroviruses.

Goff SP.

Nat Rev Microbiol. 2007 Apr;5(4):253-63. Epub 2007 Feb 26. Review.

PMID:
17325726
13.

Human catechol-O-methyltransferase haplotypes modulate protein expression by altering mRNA secondary structure.

Nackley AG, Shabalina SA, Tchivileva IE, Satterfield K, Korchynskyi O, Makarov SS, Maixner W, Diatchenko L.

Science. 2006 Dec 22;314(5807):1930-3.

14.

Architecture of a gamma retroviral genomic RNA dimer.

Badorrek CS, Weeks KM.

Biochemistry. 2006 Oct 24;45(42):12664-72.

PMID:
17042483
15.

Human immunodeficiency virus type 1 nucleocapsid zinc-finger mutations cause defects in reverse transcription and integration.

Thomas JA, Gagliardi TD, Alvord WG, Lubomirski M, Bosche WJ, Gorelick RJ.

Virology. 2006 Sep 15;353(1):41-51. Epub 2006 Jun 19.

16.

RNA flexibility in the dimerization domain of a gamma retrovirus.

Badorrek CS, Weeks KM.

Nat Chem Biol. 2005 Jul;1(2):104-11. Epub 2005 Jun 5.

PMID:
16408007
17.

Nucleic acid chaperone activity of HIV-1 nucleocapsid protein: critical role in reverse transcription and molecular mechanism.

Levin JG, Guo J, Rouzina I, Musier-Forsyth K.

Prog Nucleic Acid Res Mol Biol. 2005;80:217-86. Review. No abstract available.

PMID:
16164976
19.

RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE).

Merino EJ, Wilkinson KA, Coughlan JL, Weeks KM.

J Am Chem Soc. 2005 Mar 30;127(12):4223-31.

PMID:
15783204
20.

Synthetic dsRNA Dicer substrates enhance RNAi potency and efficacy.

Kim DH, Behlke MA, Rose SD, Chang MS, Choi S, Rossi JJ.

Nat Biotechnol. 2005 Feb;23(2):222-6. Epub 2004 Dec 26.

PMID:
15619617
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