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Results: 1 to 20 of 38

1.

Sequence variations in 185/333 messages from the purple sea urchin suggest posttranscriptional modifications to increase immune diversity.

Buckley KM, Terwilliger DP, Smith LC.

J Immunol. 2008 Dec 15;181(12):8585-94.

PMID:
19050278
[PubMed - indexed for MEDLINE]
Free Article
2.

The 185/333 gene family is a rapidly diversifying host-defense gene cluster in the purple sea urchin Strongylocentrotus purpuratus.

Buckley KM, Munshaw S, Kepler TB, Smith LC.

J Mol Biol. 2008 Jun 13;379(4):912-28. doi: 10.1016/j.jmb.2008.04.037. Epub 2008 Apr 22.

PMID:
18482736
[PubMed - indexed for MEDLINE]
3.

The Dscam homologue of the crustacean Daphnia is diversified by alternative splicing like in insects.

Brites D, McTaggart S, Morris K, Anderson J, Thomas K, Colson I, Fabbro T, Little TJ, Ebert D, Du Pasquier L.

Mol Biol Evol. 2008 Jul;25(7):1429-39. doi: 10.1093/molbev/msn087. Epub 2008 Apr 9.

PMID:
18403399
[PubMed - indexed for MEDLINE]
Free Article
4.

Localization and diversity of 185/333 proteins from the purple sea urchin--unexpected protein-size range and protein expression in a new coelomocyte type.

Brockton V, Henson JH, Raftos DA, Majeske AJ, Kim YO, Smith LC.

J Cell Sci. 2008 Feb 1;121(Pt 3):339-48. doi: 10.1242/jcs.012096. Epub 2008 Jan 15.

PMID:
18198192
[PubMed - indexed for MEDLINE]
Free Article
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7.

Genomic insights into the immune system of the sea urchin.

Rast JP, Smith LC, Loza-Coll M, Hibino T, Litman GW.

Science. 2006 Nov 10;314(5801):952-6. Review.

PMID:
17095692
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The genome of the sea urchin Strongylocentrotus purpuratus.

Sea Urchin Genome Sequencing Consortium, Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, Foltz KR, Hamdoun A, Hynes RO, Klein WH, Marzluff W, McClay DR, Morris RL, Mushegian A, Rast JP, Smith LC, Thorndyke MC, Vacquier VD, Wessel GM, Wray G, Zhang L, Elsik CG, Ermolaeva O, Hlavina W, Hofmann G, Kitts P, Landrum MJ, Mackey AJ, Maglott D, Panopoulou G, Poustka AJ, Pruitt K, Sapojnikov V, Song X, Souvorov A, Solovyev V, Wei Z, Whittaker CA, Worley K, Durbin KJ, Shen Y, Fedrigo O, Garfield D, Haygood R, Primus A, Satija R, Severson T, Gonzalez-Garay ML, Jackson AR, Milosavljevic A, Tong M, Killian CE, Livingston BT, Wilt FH, Adams N, Bellé R, Carbonneau S, Cheung R, Cormier P, Cosson B, Croce J, Fernandez-Guerra A, Genevière AM, Goel M, Kelkar H, Morales J, Mulner-Lorillon O, Robertson AJ, Goldstone JV, Cole B, Epel D, Gold B, Hahn ME, Howard-Ashby M, Scally M, Stegeman JJ, Allgood EL, Cool J, Judkins KM, McCafferty SS, Musante AM, Obar RA, Rawson AP, Rossetti BJ, Gibbons IR, Hoffman MP, Leone A, Istrail S, Materna SC, Samanta MP, Stolc V, Tongprasit W, Tu Q, Bergeron KF, Brandhorst BP, Whittle J, Berney K, Bottjer DJ, Calestani C, Peterson K, Chow E, Yuan QA, Elhaik E, Graur D, Reese JT, Bosdet I, Heesun S, Marra MA, Schein J, Anderson MK, Brockton V, Buckley KM, Cohen AH, Fugmann SD, Hibino T, Loza-Coll M, Majeske AJ, Messier C, Nair SV, Pancer Z, Terwilliger DP, Agca C, Arboleda E, Chen N, Churcher AM, Hallböök F, Humphrey GW, Idris MM, Kiyama T, Liang S, Mellott D, Mu X, Murray G, Olinski RP, Raible F, Rowe M, Taylor JS, Tessmar-Raible K, Wang D, Wilson KH, Yaguchi S, Gaasterland T, Galindo BE, Gunaratne HJ, Juliano C, Kinukawa M, Moy GW, Neill AT, Nomura M, Raisch M, Reade A, Roux MM, Song JL, Su YH, Townley IK, Voronina E, Wong JL, Amore G, Branno M, Brown ER, Cavalieri V, Duboc V, Duloquin L, Flytzanis C, Gache C, Lapraz F, Lepage T, Locascio A, Martinez P, Matassi G, Matranga V, Range R, Rizzo F, Röttinger E, Beane W, Bradham C, Byrum C, Glenn T, Hussain S, Manning G, Miranda E, Thomason R, Walton K, Wikramanayke A, Wu SY, Xu R, Brown CT, Chen L, Gray RF, Lee PY, Nam J, Oliveri P, Smith J, Muzny D, Bell S, Chacko J, Cree A, Curry S, Davis C, Dinh H, Dugan-Rocha S, Fowler J, Gill R, Hamilton C, Hernandez J, Hines S, Hume J, Jackson L, Jolivet A, Kovar C, Lee S, Lewis L, Miner G, Morgan M, Nazareth LV, Okwuonu G, Parker D, Pu LL, Thorn R, Wright R.

Science. 2006 Nov 10;314(5801):941-52. Erratum in: Science. 2007 Feb 9;315(5813):766.

PMID:
17095691
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

The immune gene repertoire encoded in the purple sea urchin genome.

Hibino T, Loza-Coll M, Messier C, Majeske AJ, Cohen AH, Terwilliger DP, Buckley KM, Brockton V, Nair SV, Berney K, Fugmann SD, Anderson MK, Pancer Z, Cameron RA, Smith LC, Rast JP.

Dev Biol. 2006 Dec 1;300(1):349-65. Epub 2006 Sep 3.

PMID:
17027739
[PubMed - indexed for MEDLINE]
Free Article
10.

Vertebrate gene finding from multiple-species alignments using a two-level strategy.

Carter D, Durbin R.

Genome Biol. 2006;7 Suppl 1:S6.1-12. Epub 2006 Aug 7.

PMID:
16925840
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Unexpected diversity displayed in cDNAs expressed by the immune cells of the purple sea urchin, Strongylocentrotus purpuratus.

Terwilliger DP, Buckley KM, Mehta D, Moorjani PG, Smith LC.

Physiol Genomics. 2006 Jul 12;26(2):134-44.

PMID:
16837652
[PubMed - indexed for MEDLINE]
Free Article
12.

Optimized mixed Markov models for motif identification.

Huang W, Umbach DM, Ohler U, Li L.

BMC Bioinformatics. 2006 Jun 2;7:279.

PMID:
16749929
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Macroarray analysis of coelomocyte gene expression in response to LPS in the sea urchin. Identification of unexpected immune diversity in an invertebrate.

Nair SV, Del Valle H, Gross PS, Terwilliger DP, Smith LC.

Physiol Genomics. 2005 Jun 16;22(1):33-47. Epub 2005 Apr 12.

PMID:
15827237
[PubMed - indexed for MEDLINE]
Free Article
14.

How did alternative splicing evolve?

Ast G.

Nat Rev Genet. 2004 Oct;5(10):773-82. Review.

PMID:
15510168
[PubMed - indexed for MEDLINE]
15.

The organization and evolution of the dipteran and hymenopteran Down syndrome cell adhesion molecule (Dscam) genes.

Graveley BR, Kaur A, Gunning D, Zipursky SL, Rowen L, Clemens JC.

RNA. 2004 Oct;10(10):1499-506.

PMID:
15383675
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Applied bioinformatics for the identification of regulatory elements.

Wasserman WW, Sandelin A.

Nat Rev Genet. 2004 Apr;5(4):276-87. Review. No abstract available.

PMID:
15131651
[PubMed - indexed for MEDLINE]
17.

Accurate identification of novel human genes through simultaneous gene prediction in human, mouse, and rat.

Dewey C, Wu JQ, Cawley S, Alexandersson M, Gibbs R, Pachter L.

Genome Res. 2004 Apr;14(4):661-4.

PMID:
15060007
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Computational gene prediction using multiple sources of evidence.

Allen JE, Pertea M, Salzberg SL.

Genome Res. 2004 Jan;14(1):142-8.

PMID:
14707176
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Gene prediction with a hidden Markov model and a new intron submodel.

Stanke M, Waack S.

Bioinformatics. 2003 Oct;19 Suppl 2:ii215-25.

PMID:
14534192
[PubMed - indexed for MEDLINE]
Free Article
20.

Current methods of gene prediction, their strengths and weaknesses.

Mathé C, Sagot MF, Schiex T, Rouzé P.

Nucleic Acids Res. 2002 Oct 1;30(19):4103-17. Review.

PMID:
12364589
[PubMed - indexed for MEDLINE]
Free PMC Article
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