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Results: 1 to 20 of 40

1.

The MmeI family: type II restriction-modification enzymes that employ single-strand modification for host protection.

Morgan RD, Dwinell EA, Bhatia TK, Lang EM, Luyten YA.

Nucleic Acids Res. 2009 Aug;37(15):5208-21. doi: 10.1093/nar/gkp534. Epub 2009 Jul 3.

PMID:
19578066
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Functional analysis of MmeI from methanol utilizer Methylophilus methylotrophus, a subtype IIC restriction-modification enzyme related to type I enzymes.

Nakonieczna J, Kaczorowski T, Obarska-Kosinska A, Bujnicki JM.

Appl Environ Microbiol. 2009 Jan;75(1):212-23. doi: 10.1128/AEM.01322-08. Epub 2008 Nov 7.

PMID:
18997032
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Molecular basis of xeroderma pigmentosum group C DNA recognition by engineered meganucleases.

Redondo P, Prieto J, Muñoz IG, Alibés A, Stricher F, Serrano L, Cabaniols JP, Daboussi F, Arnould S, Perez C, Duchateau P, Pâques F, Blanco FJ, Montoya G.

Nature. 2008 Nov 6;456(7218):107-11. doi: 10.1038/nature07343.

PMID:
18987743
[PubMed - indexed for MEDLINE]
4.

MmeI: a minimal Type II restriction-modification system that only modifies one DNA strand for host protection.

Morgan RD, Bhatia TK, Lovasco L, Davis TB.

Nucleic Acids Res. 2008 Nov;36(20):6558-70. doi: 10.1093/nar/gkn711. Epub 2008 Oct 17.

PMID:
18931376
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Computer design of obligate heterodimer meganucleases allows efficient cutting of custom DNA sequences.

Fajardo-Sanchez E, Stricher F, Pâques F, Isalan M, Serrano L.

Nucleic Acids Res. 2008 Apr;36(7):2163-73. doi: 10.1093/nar/gkn059. Epub 2008 Feb 14.

PMID:
18276641
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Generation of DNA cleavage specificities of type II restriction endonucleases by reassortment of target recognition domains.

Jurenaite-Urbanaviciene S, Serksnaite J, Kriukiene E, Giedriene J, Venclovas C, Lubys A.

Proc Natl Acad Sci U S A. 2007 Jun 19;104(25):10358-63. Epub 2007 Jun 6.

PMID:
17553965
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

PROMALS web server for accurate multiple protein sequence alignments.

Pei J, Kim BH, Tang M, Grishin NV.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W649-52. Epub 2007 Apr 22.

PMID:
17452345
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

REBASE--enzymes and genes for DNA restriction and modification.

Roberts RJ, Vincze T, Posfai J, Macelis D.

Nucleic Acids Res. 2007 Jan;35(Database issue):D269-70.

PMID:
17202163
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

A combinatorial approach to create artificial homing endonucleases cleaving chosen sequences.

Smith J, Grizot S, Arnould S, Duclert A, Epinat JC, Chames P, Prieto J, Redondo P, Blanco FJ, Bravo J, Montoya G, Pâques F, Duchateau P.

Nucleic Acids Res. 2006;34(22):e149. Epub 2006 Nov 27.

PMID:
17130168
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Computational redesign of endonuclease DNA binding and cleavage specificity.

Ashworth J, Havranek JJ, Duarte CM, Sussman D, Monnat RJ Jr, Stoddard BL, Baker D.

Nature. 2006 Jun 1;441(7093):656-9.

PMID:
16738662
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Engineering a rare-cutting restriction enzyme: genetic screening and selection of NotI variants.

Samuelson JC, Morgan RD, Benner JS, Claus TE, Packard SL, Xu SY.

Nucleic Acids Res. 2006 Feb 2;34(3):796-805. Print 2006.

PMID:
16456032
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Engineering of large numbers of highly specific homing endonucleases that induce recombination on novel DNA targets.

Arnould S, Chames P, Perez C, Lacroix E, Duclert A, Epinat JC, Stricher F, Petit AS, Patin A, Guillier S, Rolland S, Prieto J, Blanco FJ, Bravo J, Montoya G, Serrano L, Duchateau P, Pâques F.

J Mol Biol. 2006 Jan 20;355(3):443-58. Epub 2005 Nov 15.

PMID:
16310802
[PubMed - indexed for MEDLINE]
13.

A view of consecutive binding events from structures of tetrameric endonuclease SfiI bound to DNA.

Vanamee ES, Viadiu H, Kucera R, Dorner L, Picone S, Schildkraut I, Aggarwal AK.

EMBO J. 2005 Dec 7;24(23):4198-208. Epub 2005 Nov 24.

PMID:
16308566
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

In vivo selection of engineered homing endonucleases using double-strand break induced homologous recombination.

Chames P, Epinat JC, Guillier S, Patin A, Lacroix E, Pâques F.

Nucleic Acids Res. 2005 Nov 23;33(20):e178.

PMID:
16306233
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Implications for switching restriction enzyme specificities from the structure of BstYI bound to a BglII DNA sequence.

Townson SA, Samuelson JC, Xu SY, Aggarwal AK.

Structure. 2005 May;13(5):791-801.

PMID:
15893669
[PubMed - indexed for MEDLINE]
Free Article
16.

Crystal structure of BstYI at 1.85A resolution: a thermophilic restriction endonuclease with overlapping specificities to BamHI and BglII.

Townson SA, Samuelson JC, Vanamee ES, Edwards TA, Escalante CR, Xu SY, Aggarwal AK.

J Mol Biol. 2004 May 7;338(4):725-33.

PMID:
15099740
[PubMed - indexed for MEDLINE]
17.

Crystallographic and bioinformatic studies on restriction endonucleases: inference of evolutionary relationships in the "midnight zone" of homology.

Bujnicki JM.

Curr Protein Pept Sci. 2003 Oct;4(5):327-37. Review.

PMID:
14529527
[PubMed - indexed for MEDLINE]
18.

A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes.

Roberts RJ, Belfort M, Bestor T, Bhagwat AS, Bickle TA, Bitinaite J, Blumenthal RM, Degtyarev SKh, Dryden DT, Dybvig K, Firman K, Gromova ES, Gumport RI, Halford SE, Hattman S, Heitman J, Hornby DP, Janulaitis A, Jeltsch A, Josephsen J, Kiss A, Klaenhammer TR, Kobayashi I, Kong H, Krüger DH, Lacks S, Marinus MG, Miyahara M, Morgan RD, Murray NE, Nagaraja V, Piekarowicz A, Pingoud A, Raleigh E, Rao DN, Reich N, Repin VE, Selker EU, Shaw PC, Stein DC, Stoddard BL, Szybalski W, Trautner TA, Van Etten JL, Vitor JM, Wilson GG, Xu SY.

Nucleic Acids Res. 2003 Apr 1;31(7):1805-12.

PMID:
12654995
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Engineering of restriction endonucleases: using methylation activity of the bifunctional endonuclease Eco57I to select the mutant with a novel sequence specificity.

Rimseliene R, Maneliene Z, Lubys A, Janulaitis A.

J Mol Biol. 2003 Mar 21;327(2):383-91.

PMID:
12628245
[PubMed - indexed for MEDLINE]
20.

Directed evolution of restriction endonuclease BstYI to achieve increased substrate specificity.

Samuelson JC, Xu SY.

J Mol Biol. 2002 Jun 7;319(3):673-83.

PMID:
12054862
[PubMed - indexed for MEDLINE]

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