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Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus.

Hadjur S, Williams LM, Ryan NK, Cobb BS, Sexton T, Fraser P, Fisher AG, Merkenschlager M.

Nature. 2009 Jul 16;460(7253):410-3. doi: 10.1038/nature08079. Epub 2009 May 20.


CTCF-dependent enhancer-blocking by alternative chromatin loop formation.

Hou C, Zhao H, Tanimoto K, Dean A.

Proc Natl Acad Sci U S A. 2008 Dec 23;105(51):20398-403. doi: 10.1073/pnas.0808506106. Epub 2008 Dec 12.


Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters.

Core LJ, Waterfall JJ, Lis JT.

Science. 2008 Dec 19;322(5909):1845-8. doi: 10.1126/science.1162228. Epub 2008 Dec 4.


Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains.

Cuddapah S, Jothi R, Schones DE, Roh TY, Cui K, Zhao K.

Genome Res. 2009 Jan;19(1):24-32. doi: 10.1101/gr.082800.108. Epub 2008 Dec 3.


CTCF regulates cell cycle progression of alphabeta T cells in the thymus.

Heath H, Ribeiro de Almeida C, Sleutels F, Dingjan G, van de Nobelen S, Jonkers I, Ling KW, Gribnau J, Renkawitz R, Grosveld F, Hendriks RW, Galjart N.

EMBO J. 2008 Nov 5;27(21):2839-50. doi: 10.1038/emboj.2008.214. Epub 2008 Oct 16.


The LPS-induced transcriptional upregulation of the chicken lysozyme locus involves CTCF eviction and noncoding RNA transcription.

Lefevre P, Witham J, Lacroix CE, Cockerill PN, Bonifer C.

Mol Cell. 2008 Oct 10;32(1):129-39. doi: 10.1016/j.molcel.2008.07.023.


X chromosome dosage compensation: how mammals keep the balance.

Payer B, Lee JT.

Annu Rev Genet. 2008;42:733-72. doi: 10.1146/annurev.genet.42.110807.091711. Review.


Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data.

Jothi R, Cuddapah S, Barski A, Cui K, Zhao K.

Nucleic Acids Res. 2008 Sep;36(16):5221-31. doi: 10.1093/nar/gkn488. Epub 2008 Aug 6.


CTCF regulates allelic expression of Igf2 by orchestrating a promoter-polycomb repressive complex 2 intrachromosomal loop.

Li T, Hu JF, Qiu X, Ling J, Chen H, Wang S, Hou A, Vu TH, Hoffman AR.

Mol Cell Biol. 2008 Oct;28(20):6473-82. doi: 10.1128/MCB.00204-08. Epub 2008 Jul 28.


The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome.

Fu Y, Sinha M, Peterson CL, Weng Z.

PLoS Genet. 2008 Jul 25;4(7):e1000138. doi: 10.1371/journal.pgen.1000138.


Maternal depletion of CTCF reveals multiple functions during oocyte and preimplantation embryo development.

Wan LB, Pan H, Hannenhalli S, Cheng Y, Ma J, Fedoriw A, Lobanenkov V, Latham KE, Schultz RM, Bartolomei MS.

Development. 2008 Aug;135(16):2729-38. doi: 10.1242/dev.024539. Epub 2008 Jul 9.


Virus Infection Induces NF-kappaB-dependent interchromosomal associations mediating monoallelic IFN-beta gene expression.

Apostolou E, Thanos D.

Cell. 2008 Jul 11;134(1):85-96. doi: 10.1016/j.cell.2008.05.052.


Integration of external signaling pathways with the core transcriptional network in embryonic stem cells.

Chen X, Xu H, Yuan P, Fang F, Huss M, Vega VB, Wong E, Orlov YL, Zhang W, Jiang J, Loh YH, Yeo HC, Yeo ZX, Narang V, Govindarajan KR, Leong B, Shahab A, Ruan Y, Bourque G, Sung WK, Clarke ND, Wei CL, Ng HH.

Cell. 2008 Jun 13;133(6):1106-17. doi: 10.1016/j.cell.2008.04.043.


CTCF physically links cohesin to chromatin.

Rubio ED, Reiss DJ, Welcsh PL, Disteche CM, Filippova GN, Baliga NS, Aebersold R, Ranish JA, Krumm A.

Proc Natl Acad Sci U S A. 2008 Jun 17;105(24):8309-14. doi: 10.1073/pnas.0801273105. Epub 2008 Jun 11.


CCCTC-binding factor activates PARP-1 affecting DNA methylation machinery.

Guastafierro T, Cecchinelli B, Zampieri M, Reale A, Riggio G, Sthandier O, Zupi G, Calabrese L, Caiafa P.

J Biol Chem. 2008 Aug 8;283(32):21873-80. doi: 10.1074/jbc.M801170200. Epub 2008 Jun 5.


Higher order chromatin structure at the X-inactivation center via looping DNA.

Tsai CL, Rowntree RK, Cohen DE, Lee JT.

Dev Biol. 2008 Jul 15;319(2):416-25. doi: 10.1016/j.ydbio.2008.04.010. Epub 2008 Apr 18.


Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions.

Guelen L, Pagie L, Brasset E, Meuleman W, Faza MB, Talhout W, Eussen BH, de Klein A, Wessels L, de Laat W, van Steensel B.

Nature. 2008 Jun 12;453(7197):948-51. doi: 10.1038/nature06947. Epub 2008 May 7. Erratum in: Nature. 2013 Aug 8;500(7461):242.


The 3D structure of the immunoglobulin heavy-chain locus: implications for long-range genomic interactions.

Jhunjhunwala S, van Zelm MC, Peak MM, Cutchin S, Riblet R, van Dongen JJ, Grosveld FG, Knoch TA, Murre C.

Cell. 2008 Apr 18;133(2):265-79. doi: 10.1016/j.cell.2008.03.024.


The insulator factor CTCF controls MHC class II gene expression and is required for the formation of long-distance chromatin interactions.

Majumder P, Gomez JA, Chadwick BP, Boss JM.

J Exp Med. 2008 Apr 14;205(4):785-98. doi: 10.1084/jem.20071843. Epub 2008 Mar 17.

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