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Results: 1 to 20 of 74

1.

A burst of segmental duplications in the genome of the African great ape ancestor.

Marques-Bonet T, Kidd JM, Ventura M, Graves TA, Cheng Z, Hillier LW, Jiang Z, Baker C, Malfavon-Borja R, Fulton LA, Alkan C, Aksay G, Girirajan S, Siswara P, Chen L, Cardone MF, Navarro A, Mardis ER, Wilson RK, Eichler EE.

Nature. 2009 Feb 12;457(7231):877-81. doi: 10.1038/nature07744.

PMID:
19212409
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

The genomic architecture of segmental duplications and associated copy number variants in dogs.

Nicholas TJ, Cheng Z, Ventura M, Mealey K, Eichler EE, Akey JM.

Genome Res. 2009 Mar;19(3):491-9. doi: 10.1101/gr.084715.108. Epub 2009 Jan 7.

PMID:
19129542
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Real-time DNA sequencing from single polymerase molecules.

Eid J, Fehr A, Gray J, Luong K, Lyle J, Otto G, Peluso P, Rank D, Baybayan P, Bettman B, Bibillo A, Bjornson K, Chaudhuri B, Christians F, Cicero R, Clark S, Dalal R, Dewinter A, Dixon J, Foquet M, Gaertner A, Hardenbol P, Heiner C, Hester K, Holden D, Kearns G, Kong X, Kuse R, Lacroix Y, Lin S, Lundquist P, Ma C, Marks P, Maxham M, Murphy D, Park I, Pham T, Phillips M, Roy J, Sebra R, Shen G, Sorenson J, Tomaney A, Travers K, Trulson M, Vieceli J, Wegener J, Wu D, Yang A, Zaccarin D, Zhao P, Zhong F, Korlach J, Turner S.

Science. 2009 Jan 2;323(5910):133-8. doi: 10.1126/science.1162986. Epub 2008 Nov 20.

PMID:
19023044
[PubMed - indexed for MEDLINE]
Free Article
4.

Mouse phenome database.

Grubb SC, Maddatu TP, Bult CJ, Bogue MA.

Nucleic Acids Res. 2009 Jan;37(Database issue):D720-30. doi: 10.1093/nar/gkn778. Epub 2008 Nov 5.

PMID:
18987003
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

EYS, encoding an ortholog of Drosophila spacemaker, is mutated in autosomal recessive retinitis pigmentosa.

Abd El-Aziz MM, Barragan I, O'Driscoll CA, Goodstadt L, Prigmore E, Borrego S, Mena M, Pieras JI, El-Ashry MF, Safieh LA, Shah A, Cheetham ME, Carter NP, Chakarova C, Ponting CP, Bhattacharya SS, Antinolo G.

Nat Genet. 2008 Nov;40(11):1285-7. doi: 10.1038/ng.241. Epub 2008 Oct 5.

PMID:
18836446
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Reduced purifying selection prevails over positive selection in human copy number variant evolution.

Nguyen DQ, Webber C, Hehir-Kwa J, Pfundt R, Veltman J, Ponting CP.

Genome Res. 2008 Nov;18(11):1711-23. doi: 10.1101/gr.077289.108. Epub 2008 Aug 7.

PMID:
18687881
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Mouse segmental duplication and copy number variation.

She X, Cheng Z, Zöllner S, Church DM, Eichler EE.

Nat Genet. 2008 Jul;40(7):909-14. doi: 10.1038/ng.172. Epub 2008 May 22.

PMID:
18500340
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The mouse X chromosome is enriched for multicopy testis genes showing postmeiotic expression.

Mueller JL, Mahadevaiah SK, Park PJ, Warburton PE, Page DC, Turner JM.

Nat Genet. 2008 Jun;40(6):794-9. doi: 10.1038/ng.126. Epub 2008 May 4.

PMID:
18454149
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Unusually rapid evolution of Neuroligin-4 in mice.

Bolliger MF, Pei J, Maxeiner S, Boucard AA, Grishin NV, Südhof TC.

Proc Natl Acad Sci U S A. 2008 Apr 29;105(17):6421-6. doi: 10.1073/pnas.0801383105. Epub 2008 Apr 23.

PMID:
18434543
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Rapid bursts of androgen-binding protein (Abp) gene duplication occurred independently in diverse mammals.

Laukaitis CM, Heger A, Blakley TD, Munclinger P, Ponting CP, Karn RC.

BMC Evol Biol. 2008 Feb 12;8:46. doi: 10.1186/1471-2148-8-46.

PMID:
18269759
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Distinguishing protein-coding and noncoding genes in the human genome.

Clamp M, Fry B, Kamal M, Xie X, Cuff J, Lin MF, Kellis M, Lindblad-Toh K, Lander ES.

Proc Natl Acad Sci U S A. 2007 Dec 4;104(49):19428-33. Epub 2007 Nov 26.

PMID:
18040051
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

miRBase: tools for microRNA genomics.

Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ.

Nucleic Acids Res. 2008 Jan;36(Database issue):D154-8. Epub 2007 Nov 8.

PMID:
17991681
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Quiet mutations in inbred strains of mice.

Stevens JC, Banks GT, Festing MF, Fisher EM.

Trends Mol Med. 2007 Dec;13(12):512-9. Epub 2007 Nov 5. Review.

PMID:
17981508
[PubMed - indexed for MEDLINE]
14.

Validation of rice genome sequence by optical mapping.

Zhou S, Bechner MC, Place M, Churas CP, Pape L, Leong SA, Runnheim R, Forrest DK, Goldstein S, Livny M, Schwartz DC.

BMC Genomics. 2007 Aug 15;8:278.

PMID:
17697381
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Takusan: a large gene family that regulates synaptic activity.

Tu S, Shin Y, Zago WM, States BA, Eroshkin A, Lipton SA, Tong GG, Nakanishi N.

Neuron. 2007 Jul 5;55(1):69-85.

PMID:
17610818
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences.

Mikkelsen TS, Wakefield MJ, Aken B, Amemiya CT, Chang JL, Duke S, Garber M, Gentles AJ, Goodstadt L, Heger A, Jurka J, Kamal M, Mauceli E, Searle SM, Sharpe T, Baker ML, Batzer MA, Benos PV, Belov K, Clamp M, Cook A, Cuff J, Das R, Davidow L, Deakin JE, Fazzari MJ, Glass JL, Grabherr M, Greally JM, Gu W, Hore TA, Huttley GA, Kleber M, Jirtle RL, Koina E, Lee JT, Mahony S, Marra MA, Miller RD, Nicholls RD, Oda M, Papenfuss AT, Parra ZE, Pollock DD, Ray DA, Schein JE, Speed TP, Thompson K, VandeBerg JL, Wade CM, Walker JA, Waters PD, Webber C, Weidman JR, Xie X, Zody MC; Broad Institute Genome Sequencing Platform; Broad Institute Whole Genome Assembly Team, Graves JA, Ponting CP, Breen M, Samollow PB, Lander ES, Lindblad-Toh K.

Nature. 2007 May 10;447(7141):167-77.

PMID:
17495919
[PubMed - indexed for MEDLINE]
17.

An analysis of the gene complement of a marsupial, Monodelphis domestica: evolution of lineage-specific genes and giant chromosomes.

Goodstadt L, Heger A, Webber C, Ponting CP.

Genome Res. 2007 Jul;17(7):969-81. Epub 2007 May 10.

PMID:
17495010
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Expression analysis of the mouse multi-copy X-linked gene Xlr-related, meiosis-regulated (Xmr), reveals that Xmr encodes a spermatid-expressed cytoplasmic protein, SLX/XMR.

Reynard LN, Turner JM, Cocquet J, Mahadevaiah SK, Touré A, Höög C, Burgoyne PS.

Biol Reprod. 2007 Aug;77(2):329-35. Epub 2007 May 2.

PMID:
17475928
[PubMed - indexed for MEDLINE]
Free Article
19.

A new partner for the international knockout mouse consortium.

Collins FS, Finnell RH, Rossant J, Wurst W.

Cell. 2007 Apr 20;129(2):235. No abstract available.

PMID:
17448981
[PubMed - indexed for MEDLINE]
Free Article
20.

Evolutionary and biomedical insights from the rhesus macaque genome.

Rhesus Macaque Genome Sequencing and Analysis Consortium, Gibbs RA, Rogers J, Katze MG, Bumgarner R, Weinstock GM, Mardis ER, Remington KA, Strausberg RL, Venter JC, Wilson RK, Batzer MA, Bustamante CD, Eichler EE, Hahn MW, Hardison RC, Makova KD, Miller W, Milosavljevic A, Palermo RE, Siepel A, Sikela JM, Attaway T, Bell S, Bernard KE, Buhay CJ, Chandrabose MN, Dao M, Davis C, Delehaunty KD, Ding Y, Dinh HH, Dugan-Rocha S, Fulton LA, Gabisi RA, Garner TT, Godfrey J, Hawes AC, Hernandez J, Hines S, Holder M, Hume J, Jhangiani SN, Joshi V, Khan ZM, Kirkness EF, Cree A, Fowler RG, Lee S, Lewis LR, Li Z, Liu YS, Moore SM, Muzny D, Nazareth LV, Ngo DN, Okwuonu GO, Pai G, Parker D, Paul HA, Pfannkoch C, Pohl CS, Rogers YH, Ruiz SJ, Sabo A, Santibanez J, Schneider BW, Smith SM, Sodergren E, Svatek AF, Utterback TR, Vattathil S, Warren W, White CS, Chinwalla AT, Feng Y, Halpern AL, Hillier LW, Huang X, Minx P, Nelson JO, Pepin KH, Qin X, Sutton GG, Venter E, Walenz BP, Wallis JW, Worley KC, Yang SP, Jones SM, Marra MA, Rocchi M, Schein JE, Baertsch R, Clarke L, Csürös M, Glasscock J, Harris RA, Havlak P, Jackson AR, Jiang H, Liu Y, Messina DN, Shen Y, Song HX, Wylie T, Zhang L, Birney E, Han K, Konkel MK, Lee J, Smit AF, Ullmer B, Wang H, Xing J, Burhans R, Cheng Z, Karro JE, Ma J, Raney B, She X, Cox MJ, Demuth JP, Dumas LJ, Han SG, Hopkins J, Karimpour-Fard A, Kim YH, Pollack JR, Vinar T, Addo-Quaye C, Degenhardt J, Denby A, Hubisz MJ, Indap A, Kosiol C, Lahn BT, Lawson HA, Marklein A, Nielsen R, Vallender EJ, Clark AG, Ferguson B, Hernandez RD, Hirani K, Kehrer-Sawatzki H, Kolb J, Patil S, Pu LL, Ren Y, Smith DG, Wheeler DA, Schenck I, Ball EV, Chen R, Cooper DN, Giardine B, Hsu F, Kent WJ, Lesk A, Nelson DL, O'brien WE, Prüfer K, Stenson PD, Wallace JC, Ke H, Liu XM, Wang P, Xiang AP, Yang F, Barber GP, Haussler D, Karolchik D, Kern AD, Kuhn RM, Smith KE, Zwieg AS.

Science. 2007 Apr 13;316(5822):222-34.

PMID:
17431167
[PubMed - indexed for MEDLINE]
Free Article

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