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Results: 1 to 20 of 27

1.

Genevestigator v3: a reference expression database for the meta-analysis of transcriptomes.

Hruz T, Laule O, Szabo G, Wessendorp F, Bleuler S, Oertle L, Widmayer P, Gruissem W, Zimmermann P.

Adv Bioinformatics. 2008;2008:420747. doi: 10.1155/2008/420747. Epub 2008 Jul 8.

PMID:
19956698
[PubMed]
Free PMC Article
2.

Parameter estimation for robust HMM analysis of ChIP-chip data.

Humburg P, Bulger D, Stone G.

BMC Bioinformatics. 2008 Aug 18;9:343. doi: 10.1186/1471-2105-9-343.

PMID:
18706106
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

ChIPmix: mixture model of regressions for two-color ChIP-chip analysis.

Martin-Magniette ML, Mary-Huard T, Bérard C, Robin S.

Bioinformatics. 2008 Aug 15;24(16):i181-6. doi: 10.1093/bioinformatics/btn280.

PMID:
18689822
[PubMed - indexed for MEDLINE]
Free Article
4.

Mechanisms of cell cycle control revealed by a systematic and quantitative overexpression screen in S. cerevisiae.

Niu W, Li Z, Zhan W, Iyer VR, Marcotte EM.

PLoS Genet. 2008 Jul 11;4(7):e1000120. doi: 10.1371/journal.pgen.1000120.

PMID:
18617996
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets.

Johnson DS, Li W, Gordon DB, Bhattacharjee A, Curry B, Ghosh J, Brizuela L, Carroll JS, Brown M, Flicek P, Koch CM, Dunham I, Bieda M, Xu X, Farnham PJ, Kapranov P, Nix DA, Gingeras TR, Zhang X, Holster H, Jiang N, Green RD, Song JS, McCuine SA, Anton E, Nguyen L, Trinklein ND, Ye Z, Ching K, Hawkins D, Ren B, Scacheri PC, Rozowsky J, Karpikov A, Euskirchen G, Weissman S, Gerstein M, Snyder M, Yang A, Moqtaderi Z, Hirsch H, Shulha HP, Fu Y, Weng Z, Struhl K, Myers RM, Lieb JD, Liu XS.

Genome Res. 2008 Mar;18(3):393-403. doi: 10.1101/gr.7080508. Epub 2008 Feb 7.

PMID:
18258921
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

A physical model for tiling array analysis.

Chung HR, Kostka D, Vingron M.

Bioinformatics. 2007 Jul 1;23(13):i80-6.

PMID:
17646349
[PubMed - indexed for MEDLINE]
Free Article
7.

A survey of essential gene function in the yeast cell division cycle.

Yu L, Peña Castillo L, Mnaimneh S, Hughes TR, Brown GW.

Mol Biol Cell. 2006 Nov;17(11):4736-47. Epub 2006 Aug 30.

PMID:
16943325
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

A network of local and redundant gene regulation governs Arabidopsis seed maturation.

To A, Valon C, Savino G, Guilleminot J, Devic M, Giraudat J, Parcy F.

Plant Cell. 2006 Jul;18(7):1642-51. Epub 2006 May 26.

PMID:
16731585
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

New weakly expressed cell cycle-regulated genes in yeast.

de Lichtenberg U, Wernersson R, Jensen TS, Nielsen HB, Fausbøll A, Schmidt P, Hansen FB, Knudsen S, Brunak S.

Yeast. 2005 Nov;22(15):1191-201.

PMID:
16278933
[PubMed - indexed for MEDLINE]
10.

Seed maturation: developing an intrusive phase to accomplish a quiescent state.

Vicente-Carbajosa J, Carbonero P.

Int J Dev Biol. 2005;49(5-6):645-51. Review.

PMID:
16096971
[PubMed - indexed for MEDLINE]
Free Article
11.

TileMap: create chromosomal map of tiling array hybridizations.

Ji H, Wong WH.

Bioinformatics. 2005 Sep 15;21(18):3629-36. Epub 2005 Jul 26.

PMID:
16046496
[PubMed - indexed for MEDLINE]
Free Article
12.

A hidden Markov model for analyzing ChIP-chip experiments on genome tiling arrays and its application to p53 binding sequences.

Li W, Meyer CA, Liu XS.

Bioinformatics. 2005 Jun;21 Suppl 1:i274-82.

PMID:
15961467
[PubMed - indexed for MEDLINE]
Free Article
13.

GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.

Zimmermann P, Hirsch-Hoffmann M, Hennig L, Gruissem W.

Plant Physiol. 2004 Sep;136(1):2621-32. Erratum in: Plant Physiol. 2004 Dec;136(4):4335.

PMID:
15375207
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Role of the yeast Rrp1 protein in the dynamics of pre-ribosome maturation.

Horsey EW, Jakovljevic J, Miles TD, Harnpicharnchai P, Woolford JL Jr.

RNA. 2004 May;10(5):813-27.

PMID:
15100437
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Seed-specific transcription factors ABI3 and FUS3: molecular interaction with DNA.

Mönke G, Altschmied L, Tewes A, Reidt W, Mock HP, Bäumlein H, Conrad U.

Planta. 2004 May;219(1):158-66. Epub 2004 Feb 7.

PMID:
14767767
[PubMed - indexed for MEDLINE]
16.

Gene structure conservation aids similarity based gene prediction.

Meyer IM, Durbin R.

Nucleic Acids Res. 2004 Feb 4;32(2):776-83. Print 2004.

PMID:
14764925
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Viviparous1 alters global gene expression patterns through regulation of abscisic acid signaling.

Suzuki M, Ketterling MG, Li QB, McCarty DR.

Plant Physiol. 2003 Jul;132(3):1664-77.

PMID:
12857845
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Large-scale functional genomic analysis of sporulation and meiosis in Saccharomyces cerevisiae.

Enyenihi AH, Saunders WS.

Genetics. 2003 Jan;163(1):47-54.

PMID:
12586695
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias.

Bolstad BM, Irizarry RA, Astrand M, Speed TP.

Bioinformatics. 2003 Jan 22;19(2):185-93.

PMID:
12538238
[PubMed - indexed for MEDLINE]
Free Article
20.

Transcriptional regulatory networks in Saccharomyces cerevisiae.

Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, Hannett NM, Harbison CT, Thompson CM, Simon I, Zeitlinger J, Jennings EG, Murray HL, Gordon DB, Ren B, Wyrick JJ, Tagne JB, Volkert TL, Fraenkel E, Gifford DK, Young RA.

Science. 2002 Oct 25;298(5594):799-804.

PMID:
12399584
[PubMed - indexed for MEDLINE]
Free Article

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