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Results: 1 to 20 of 103

1.

Genome-scale spatiotemporal analysis of Caenorhabditis elegans microRNA promoter activity.

Martinez NJ, Ow MC, Reece-Hoyes JS, Barrasa MI, Ambros VR, Walhout AJ.

Genome Res. 2008 Dec;18(12):2005-15. doi: 10.1101/gr.083055.108. Epub 2008 Nov 3.

PMID:
18981266
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals.

Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP.

Nature. 2008 Oct 30;455(7217):1193-7. doi: 10.1038/nature07415. Epub 2008 Oct 1.

PMID:
18830242
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiation.

Tay Y, Zhang J, Thomson AM, Lim B, Rigoutsos I.

Nature. 2008 Oct 23;455(7216):1124-8. doi: 10.1038/nature07299. Epub 2008 Sep 17. Erratum in: Nature. 2009 Mar 26;458(7237):538.

PMID:
18806776
[PubMed - indexed for MEDLINE]
4.

A C. elegans genome-scale microRNA network contains composite feedback motifs with high flux capacity.

Martinez NJ, Ow MC, Barrasa MI, Hammell M, Sequerra R, Doucette-Stamm L, Roth FP, Ambros VR, Walhout AJ.

Genes Dev. 2008 Sep 15;22(18):2535-49. doi: 10.1101/gad.1678608.

PMID:
18794350
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

The FLYWCH transcription factors FLH-1, FLH-2, and FLH-3 repress embryonic expression of microRNA genes in C. elegans.

Ow MC, Martinez NJ, Olsen PH, Silverman HS, Barrasa MI, Conradt B, Walhout AJ, Ambros V.

Genes Dev. 2008 Sep 15;22(18):2520-34. doi: 10.1101/gad.1678808.

PMID:
18794349
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells.

Marson A, Levine SS, Cole MF, Frampton GM, Brambrink T, Johnstone S, Guenther MG, Johnston WK, Wernig M, Newman J, Calabrese JM, Dennis LM, Volkert TL, Gupta S, Love J, Hannett N, Sharp PA, Bartel DP, Jaenisch R, Young RA.

Cell. 2008 Aug 8;134(3):521-33. doi: 10.1016/j.cell.2008.07.020.

PMID:
18692474
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites.

Noyes MB, Christensen RG, Wakabayashi A, Stormo GD, Brodsky MH, Wolfe SA.

Cell. 2008 Jun 27;133(7):1277-89. doi: 10.1016/j.cell.2008.05.023.

PMID:
18585360
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences.

Berger MF, Badis G, Gehrke AR, Talukder S, Philippakis AA, Peña-Castillo L, Alleyne TM, Mnaimneh S, Botvinnik OB, Chan ET, Khalid F, Zhang W, Newburger D, Jaeger SA, Morris QD, Bulyk ML, Hughes TR.

Cell. 2008 Jun 27;133(7):1266-76. doi: 10.1016/j.cell.2008.05.024.

PMID:
18585359
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

The microRNA miR-1 regulates a MEF-2-dependent retrograde signal at neuromuscular junctions.

Simon DJ, Madison JM, Conery AL, Thompson-Peer KL, Soskis M, Ruvkun GB, Kaplan JM, Kim JK.

Cell. 2008 May 30;133(5):903-15. doi: 10.1016/j.cell.2008.04.035.

PMID:
18510933
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

miR-148 targets human DNMT3b protein coding region.

Duursma AM, Kedde M, Schrier M, le Sage C, Agami R.

RNA. 2008 May;14(5):872-7. doi: 10.1261/rna.972008. Epub 2008 Mar 26.

PMID:
18367714
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Transcription factor functionality and transcription regulatory networks.

Grove CA, Walhout AJ.

Mol Biosyst. 2008 Apr;4(4):309-14. doi: 10.1039/b715909a. Epub 2008 Feb 21.

PMID:
18354784
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Selective blockade of microRNA processing by Lin28.

Viswanathan SR, Daley GQ, Gregory RI.

Science. 2008 Apr 4;320(5872):97-100. doi: 10.1126/science.1154040. Epub 2008 Feb 21.

PMID:
18292307
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?

Filipowicz W, Bhattacharyya SN, Sonenberg N.

Nat Rev Genet. 2008 Feb;9(2):102-14. doi: 10.1038/nrg2290. Review.

PMID:
18197166
[PubMed - indexed for MEDLINE]
14.

RNA-binding protein Dnd1 inhibits microRNA access to target mRNA.

Kedde M, Strasser MJ, Boldajipour B, Oude Vrielink JA, Slanchev K, le Sage C, Nagel R, Voorhoeve PM, van Duijse J, Ørom UA, Lund AH, Perrakis A, Raz E, Agami R.

Cell. 2007 Dec 28;131(7):1273-86.

PMID:
18155131
[PubMed - indexed for MEDLINE]
Free Article
15.

Most Caenorhabditis elegans microRNAs are individually not essential for development or viability.

Miska EA, Alvarez-Saavedra E, Abbott AL, Lau NC, Hellman AB, McGonagle SM, Bartel DP, Ambros VR, Horvitz HR.

PLoS Genet. 2007 Dec;3(12):e215.

PMID:
18085825
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

DBD--taxonomically broad transcription factor predictions: new content and functionality.

Wilson D, Charoensawan V, Kummerfeld SK, Teichmann SA.

Nucleic Acids Res. 2008 Jan;36(Database issue):D88-92. Epub 2007 Dec 11.

PMID:
18073188
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Identification of phylogenetically conserved microRNA cis-regulatory elements across 12 Drosophila species.

Wang X, Gu J, Zhang MQ, Li Y.

Bioinformatics. 2008 Jan 15;24(2):165-71. Epub 2007 Nov 24.

PMID:
18037683
[PubMed - indexed for MEDLINE]
Free Article
18.

JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update.

Bryne JC, Valen E, Tang MH, Marstrand T, Winther O, da Piedade I, Krogh A, Lenhard B, Sandelin A.

Nucleic Acids Res. 2008 Jan;36(Database issue):D102-6. Epub 2007 Nov 15.

PMID:
18006571
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs.

Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC.

Genome Res. 2007 Dec;17(12):1850-64. Epub 2007 Nov 7.

PMID:
17989254
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

A MicroRNA feedback circuit in midbrain dopamine neurons.

Kim J, Inoue K, Ishii J, Vanti WB, Voronov SV, Murchison E, Hannon G, Abeliovich A.

Science. 2007 Aug 31;317(5842):1220-4.

PMID:
17761882
[PubMed - indexed for MEDLINE]
Free PMC Article

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