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Results: 1 to 20 of 29

References for PMC Articles for PubMed (Select 19239685)

1.

Heuristic approach to sparse approximation of gene regulatory networks.

Andrecut M, Huang S, Kauffman SA.

J Comput Biol. 2008 Nov;15(9):1173-86. doi: 10.1089/cmb.2008.0087.

PMID:
18844584
2.

On the sparse reconstruction of gene networks.

Andrecut M, Kauffman SA.

J Comput Biol. 2008 Jan-Feb;15(1):21-30. doi: 10.1089/cmb.2007.0185.

PMID:
18257675
3.

Dialogue on reverse-engineering assessment and methods: the DREAM of high-throughput pathway inference.

Stolovitzky G, Monroe D, Califano A.

Ann N Y Acad Sci. 2007 Dec;1115:1-22. Epub 2007 Oct 9. Review.

PMID:
17925349
4.

ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context.

Margolin AA, Nemenman I, Basso K, Wiggins C, Stolovitzky G, Dalla Favera R, Califano A.

BMC Bioinformatics. 2006 Mar 20;7 Suppl 1:S7.

PMID:
16723010
5.

SYNGR1 is associated with schizophrenia and bipolar disorder in southern India.

Verma R, Kubendran S, Das SK, Jain S, Brahmachari SK.

J Hum Genet. 2005;50(12):635-40. Epub 2005 Oct 8.

PMID:
16215643
6.

Analysis of cellular responses to aflatoxin B(1) in yeast expressing human cytochrome P450 1A2 using cDNA microarrays.

Guo Y, Breeden LL, Fan W, Zhao LP, Eaton DL, Zarbl H.

Mutat Res. 2006 Jan 29;593(1-2):121-42. Epub 2005 Aug 24.

PMID:
16122766
7.

Stochasticity in gene expression: from theories to phenotypes.

Kaern M, Elston TC, Blake WJ, Collins JJ.

Nat Rev Genet. 2005 Jun;6(6):451-64. Review.

PMID:
15883588
8.

Causal protein-signaling networks derived from multiparameter single-cell data.

Sachs K, Perez O, Pe'er D, Lauffenburger DA, Nolan GP.

Science. 2005 Apr 22;308(5721):523-9. Erratum in: Science. 2005 Aug 19;309(5738):1187.

PMID:
15845847
9.

Bayesian network and nonparametric heteroscedastic regression for nonlinear modeling of genetic network.

Imoto S, Sunyong K, Goto T, Aburatani S, Tashiro K, Kuhara S, Miyano S.

Proc IEEE Comput Soc Bioinform Conf. 2002;1:219-27.

PMID:
15838138
10.

Reverse engineering of regulatory networks in human B cells.

Basso K, Margolin AA, Stolovitzky G, Klein U, Dalla-Favera R, Califano A.

Nat Genet. 2005 Apr;37(4):382-90. Epub 2005 Mar 20.

PMID:
15778709
11.

An empirical Bayes approach to inferring large-scale gene association networks.

Schäfer J, Strimmer K.

Bioinformatics. 2005 Mar;21(6):754-64. Epub 2004 Oct 12.

PMID:
15479708
12.

Genomic analysis of regulatory network dynamics reveals large topological changes.

Luscombe NM, Babu MM, Yu H, Snyder M, Teichmann SA, Gerstein M.

Nature. 2004 Sep 16;431(7006):308-12.

PMID:
15372033
13.

Inferring cellular networks using probabilistic graphical models.

Friedman N.

Science. 2004 Feb 6;303(5659):799-805. Review.

PMID:
14764868
14.

Reverse engineering gene networks using singular value decomposition and robust regression.

Yeung MK, Tegnér J, Collins JJ.

Proc Natl Acad Sci U S A. 2002 Apr 30;99(9):6163-8.

PMID:
11983907
15.

Topological and causal structure of the yeast transcriptional regulatory network.

Guelzim N, Bottani S, Bourgine P, Képès F.

Nat Genet. 2002 May;31(1):60-3. Epub 2002 Apr 22.

PMID:
11967534
16.

Modeling and simulation of genetic regulatory systems: a literature review.

de Jong H.

J Comput Biol. 2002;9(1):67-103. Review.

PMID:
11911796
17.

Tetraspan vesicle membrane proteins: synthesis, subcellular localization, and functional properties.

Hübner K, Windoffer R, Hutter H, Leube RE.

Int Rev Cytol. 2002;214:103-59. Review.

PMID:
11893164
18.

Probabilistic Boolean Networks: a rule-based uncertainty model for gene regulatory networks.

Shmulevich I, Dougherty ER, Kim S, Zhang W.

Bioinformatics. 2002 Feb;18(2):261-74.

PMID:
11847074
19.

A comparison of genetic network models.

Wessels LF, van Someren EP, Reinders MJ.

Pac Symp Biocomput. 2001:508-19.

PMID:
11262968
20.

Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks.

Hartemink AJ, Gifford DK, Jaakkola TS, Young RA.

Pac Symp Biocomput. 2001:422-33.

PMID:
11262961
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