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Epigenomic consequences of immortalized plant cell suspension culture.

Tanurdzic M, Vaughn MW, Jiang H, Lee TJ, Slotkin RK, Sosinski B, Thompson WF, Doerge RW, Martienssen RA.

PLoS Biol. 2008 Dec 9;6(12):2880-95. doi: 10.1371/journal.pbio.0060302.


An epigenetic role for maternally inherited piRNAs in transposon silencing.

Brennecke J, Malone CD, Aravin AA, Sachidanandam R, Stark A, Hannon GJ.

Science. 2008 Nov 28;322(5906):1387-92. doi: 10.1126/science.1165171.


ROS3 is an RNA-binding protein required for DNA demethylation in Arabidopsis.

Zheng X, Pontes O, Zhu J, Miki D, Zhang F, Li WX, Iida K, Kapoor A, Pikaard CS, Zhu JK.

Nature. 2008 Oct 30;455(7217):1259-62. doi: 10.1038/nature07305. Epub 2008 Sep 24.


piRNA-mediated nuclear accumulation of retrotransposon transcripts in the Drosophila female germline.

Chambeyron S, Popkova A, Payen-Groschêne G, Brun C, Laouini D, Pelisson A, Bucheton A.

Proc Natl Acad Sci U S A. 2008 Sep 30;105(39):14964-9. doi: 10.1073/pnas.0805943105. Epub 2008 Sep 22.


Kismeth: analyzer of plant methylation states through bisulfite sequencing.

Gruntman E, Qi Y, Slotkin RK, Roeder T, Martienssen RA, Sachidanandam R.

BMC Bioinformatics. 2008 Sep 11;9:371. doi: 10.1186/1471-2105-9-371.


Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.

Wang Y, Zhang WZ, Song LF, Zou JJ, Su Z, Wu WH.

Plant Physiol. 2008 Nov;148(3):1201-11. doi: 10.1104/pp.108.126375. Epub 2008 Sep 5.


Comparative transcriptomics of Arabidopsis sperm cells.

Borges F, Gomes G, Gardner R, Moreno N, McCormick S, Feijó JA, Becker JD.

Plant Physiol. 2008 Oct;148(2):1168-81. doi: 10.1104/pp.108.125229. Epub 2008 Jul 30.


DNA methylation causes predominant maternal controls of plant embryo growth.

FitzGerald J, Luo M, Chaudhury A, Berger F.

PLoS One. 2008 May 28;3(5):e2298. doi: 10.1371/journal.pone.0002298.


RNA interference guides histone modification during the S phase of chromosomal replication.

Kloc A, Zaratiegui M, Nora E, Martienssen R.

Curr Biol. 2008 Apr 8;18(7):490-5. doi: 10.1016/j.cub.2008.03.016.


The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race.

Aravin AA, Hannon GJ, Brennecke J.

Science. 2007 Nov 2;318(5851):761-4. Review.


Drosophila PIWI associates with chromatin and interacts directly with HP1a.

Brower-Toland B, Findley SD, Jiang L, Liu L, Yin H, Dus M, Zhou P, Elgin SC, Lin H.

Genes Dev. 2007 Sep 15;21(18):2300-11.


Intra- and intercellular RNA interference in Arabidopsis thaliana requires components of the microRNA and heterochromatic silencing pathways.

Dunoyer P, Himber C, Ruiz-Ferrer V, Alioua A, Voinnet O.

Nat Genet. 2007 Jul;39(7):848-56. Epub 2007 Jun 10.


Distinct dynamics of HISTONE3 variants between the two fertilization products in plants.

Ingouff M, Hamamura Y, Gourgues M, Higashiyama T, Berger F.

Curr Biol. 2007 Jun 19;17(12):1032-7. Epub 2007 Jun 7.


MIWI2 is essential for spermatogenesis and repression of transposons in the mouse male germline.

Carmell MA, Girard A, van de Kant HJ, Bourc'his D, Bestor TH, de Rooij DG, Hannon GJ.

Dev Cell. 2007 Apr;12(4):503-14. Epub 2007 Mar 29.


An expression atlas of rice mRNAs and small RNAs.

Nobuta K, Venu RC, Lu C, Beló A, Vemaraju K, Kulkarni K, Wang W, Pillay M, Green PJ, Wang GL, Meyers BC.

Nat Biotechnol. 2007 Apr;25(4):473-7. Epub 2007 Mar 11.


Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila.

Brennecke J, Aravin AA, Stark A, Dus M, Kellis M, Sachidanandam R, Hannon GJ.

Cell. 2007 Mar 23;128(6):1089-103. Epub 2007 Mar 8.


Genome-wide profiling and analysis of Arabidopsis siRNAs.

Kasschau KD, Fahlgren N, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Carrington JC.

PLoS Biol. 2007 Mar;5(3):e57.


Histone H3 variants in male gametic cells of lily and H3 methylation in mature pollen.

Okada T, Singh MB, Bhalla PL.

Plant Mol Biol. 2006 Nov;62(4-5):503-12. Epub 2006 Aug 17.


Characterization of the piRNA complex from rat testes.

Lau NC, Seto AG, Kim J, Kuramochi-Miyagawa S, Nakano T, Bartel DP, Kingston RE.

Science. 2006 Jul 21;313(5785):363-7. Epub 2006 Jun 15.

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