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Results: 1 to 20 of 46

References for PMC Articles for PubMed (Select 19196981)

1.

Protein stabilization by the rational design of surface charge-charge interactions.

Schweiker KL, Makhatadze GI.

Methods Mol Biol. 2009;490:261-83. doi: 10.1007/978-1-59745-367-7_11.

PMID:
19157087
2.

On the relationship between thermal stability and catalytic power of enzymes.

Roca M, Liu H, Messer B, Warshel A.

Biochemistry. 2007 Dec 25;46(51):15076-88. Epub 2007 Dec 1.

3.

The Pfam protein families database.

Finn RD, Tate J, Mistry J, Coggill PC, Sammut SJ, Hotz HR, Ceric G, Forslund K, Eddy SR, Sonnhammer EL, Bateman A.

Nucleic Acids Res. 2008 Jan;36(Database issue):D281-8. Epub 2007 Nov 26.

4.

Computational design of the Fyn SH3 domain with increased stability through optimization of surface charge charge interactions.

Schweiker KL, Zarrine-Afsar A, Davidson AR, Makhatadze GI.

Protein Sci. 2007 Dec;16(12):2694-702.

5.

High-resolution structural and thermodynamic analysis of extreme stabilization of human procarboxypeptidase by computational protein design.

Dantas G, Corrent C, Reichow SL, Havranek JJ, Eletr ZM, Isern NG, Kuhlman B, Varani G, Merritt EA, Baker D.

J Mol Biol. 2007 Mar 2;366(4):1209-21. Epub 2006 Dec 2.

6.

Role of the charge-charge interactions in defining stability and halophilicity of the CspB proteins.

Gribenko AV, Makhatadze GI.

J Mol Biol. 2007 Feb 23;366(3):842-56. Epub 2006 Nov 22.

PMID:
17188709
7.

Elimination of the C-cap in ubiquitin - structure, dynamics and thermodynamic consequences.

Ermolenko DN, Dangi B, Gvritishvili A, Gronenborn AM, Makhatadze GI.

Biophys Chem. 2007 Mar;126(1-3):25-35. Epub 2006 Apr 5.

PMID:
16713063
8.

Protein stability and surface electrostatics: a charged relationship.

Strickler SS, Gribenko AV, Gribenko AV, Keiffer TR, Tomlinson J, Reihle T, Loladze VV, Makhatadze GI.

Biochemistry. 2006 Mar 7;45(9):2761-6.

PMID:
16503630
9.

Effects of charge-to-alanine substitutions on the stability of ribosomal protein L30e from Thermococcus celer.

Lee CF, Makhatadze GI, Wong KB.

Biochemistry. 2005 Dec 27;44(51):16817-25.

PMID:
16363795
10.

Electrostatics in computational protein design.

Vizcarra CL, Mayo SL.

Curr Opin Chem Biol. 2005 Dec;9(6):622-6. Epub 2005 Oct 28. Review.

PMID:
16257567
11.

How to improve nature: study of the electrostatic properties of the surface of alpha-lactalbumin.

Permyakov SE, Makhatadze GI, Owenius R, Uversky VN, Brooks CL, Permyakov EA, Berliner LJ.

Protein Eng Des Sel. 2005 Sep;18(9):425-33. Epub 2005 Aug 10.

12.

Computational thermostabilization of an enzyme.

Korkegian A, Black ME, Baker D, Stoddard BL.

Science. 2005 May 6;308(5723):857-60.

13.

A captured folding intermediate involved in dimerization and domain-swapping of GB1.

Byeon IJ, Louis JM, Gronenborn AM.

J Mol Biol. 2004 Jul 9;340(3):615-25.

PMID:
15210358
14.

Mechanism of thermostabilization in a designed cold shock protein with optimized surface electrostatic interactions.

Makhatadze GI, Loladze VV, Gribenko AV, Lopez MM.

J Mol Biol. 2004 Feb 27;336(4):929-42.

PMID:
15095870
15.

Cdc42: new roads to travel.

Cerione RA.

Trends Cell Biol. 2004 Mar;14(3):127-32. Review.

PMID:
15003621
16.

A large scale test of computational protein design: folding and stability of nine completely redesigned globular proteins.

Dantas G, Kuhlman B, Callender D, Wong M, Baker D.

J Mol Biol. 2003 Sep 12;332(2):449-60.

PMID:
12948494
17.
18.

De novo design of biocatalysts.

Bolon DN, Voigt CA, Mayo SL.

Curr Opin Chem Biol. 2002 Apr;6(2):125-9. Review.

PMID:
12038994
19.
20.

THEMATICS: a simple computational predictor of enzyme function from structure.

Ondrechen MJ, Clifton JG, Ringe D.

Proc Natl Acad Sci U S A. 2001 Oct 23;98(22):12473-8. Epub 2001 Oct 16.

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