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Results: 1 to 20 of 31

1.

Defining the regulatory network of the tissue-specific splicing factors Fox-1 and Fox-2.

Zhang C, Zhang Z, Castle J, Sun S, Johnson J, Krainer AR, Zhang MQ.

Genes Dev. 2008 Sep 15;22(18):2550-63. doi: 10.1101/gad.1703108. Erratum in: Genes Dev. 2008 Oct 15;22(20):2902.

PMID:
18794351
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Post-transcriptional gene regulation: from genome-wide studies to principles.

Halbeisen RE, Galgano A, Scherrer T, Gerber AP.

Cell Mol Life Sci. 2008 Mar;65(5):798-813. Review.

PMID:
18043867
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Alternative splicing events identified in human embryonic stem cells and neural progenitors.

Yeo GW, Xu X, Liang TY, Muotri AR, Carson CT, Coufal NG, Gage FH.

PLoS Comput Biol. 2007 Oct;3(10):1951-67. Epub 2007 Aug 24.

PMID:
17967047
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

The MicroRNA miR-124 promotes neuronal differentiation by triggering brain-specific alternative pre-mRNA splicing.

Makeyev EV, Zhang J, Carrasco MA, Maniatis T.

Mol Cell. 2007 Aug 3;27(3):435-48.

PMID:
17679093
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

A post-transcriptional regulatory switch in polypyrimidine tract-binding proteins reprograms alternative splicing in developing neurons.

Boutz PL, Stoilov P, Li Q, Lin CH, Chawla G, Ostrow K, Shiue L, Ares M Jr, Black DL.

Genes Dev. 2007 Jul 1;21(13):1636-52.

PMID:
17606642
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing.

Robertson G, Hirst M, Bainbridge M, Bilenky M, Zhao Y, Zeng T, Euskirchen G, Bernier B, Varhol R, Delaney A, Thiessen N, Griffith OL, He A, Marra M, Snyder M, Jones S.

Nat Methods. 2007 Aug;4(8):651-7. Epub 2007 Jun 11.

PMID:
17558387
[PubMed - indexed for MEDLINE]
7.

Discovery and analysis of evolutionarily conserved intronic splicing regulatory elements.

Yeo GW, Van Nostrand EL, Liang TY.

PLoS Genet. 2007 May 25;3(5):e85. Epub 2007 Apr 13. Erratum in: PLoS Genet. 2007 Jul;3(7):e122. Nostrand, Eric L Van [corrected to Van Nostrand, Eric L].

PMID:
17530930
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

An RNA map predicting Nova-dependent splicing regulation.

Ule J, Stefani G, Mele A, Ruggiu M, Wang X, Taneri B, Gaasterland T, Blencowe BJ, Darnell RB.

Nature. 2006 Nov 30;444(7119):580-6. Epub 2006 Oct 25.

PMID:
17065982
[PubMed - indexed for MEDLINE]
9.

Intronic alternative splicing regulators identified by comparative genomics in nematodes.

Kabat JL, Barberan-Soler S, McKenna P, Clawson H, Farrer T, Zahler AM.

PLoS Comput Biol. 2006 Jul 14;2(7):e86. Epub 2006 Jun 5.

PMID:
16839192
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Comparative analysis identifies exonic splicing regulatory sequences--The complex definition of enhancers and silencers.

Goren A, Ram O, Amit M, Keren H, Lev-Maor G, Vig I, Pupko T, Ast G.

Mol Cell. 2006 Jun 23;22(6):769-81.

PMID:
16793546
[PubMed - indexed for MEDLINE]
Free Article
11.

Fox-2 splicing factor binds to a conserved intron motif to promote inclusion of protein 4.1R alternative exon 16.

Ponthier JL, Schluepen C, Chen W, Lersch RA, Gee SL, Hou VC, Lo AJ, Short SA, Chasis JA, Winkelmann JC, Conboy JG.

J Biol Chem. 2006 May 5;281(18):12468-74. Epub 2006 Mar 14.

PMID:
16537540
[PubMed - indexed for MEDLINE]
Free Article
12.

Fox-2 mediates epithelial cell-specific fibroblast growth factor receptor 2 exon choice.

Baraniak AP, Chen JR, Garcia-Blanco MA.

Mol Cell Biol. 2006 Feb;26(4):1209-22.

PMID:
16449636
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Molecular basis of RNA recognition by the human alternative splicing factor Fox-1.

Auweter SD, Fasan R, Reymond L, Underwood JG, Black DL, Pitsch S, Allain FH.

EMBO J. 2006 Jan 11;25(1):163-73. Epub 2005 Dec 15.

PMID:
16362037
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Homologues of the Caenorhabditis elegans Fox-1 protein are neuronal splicing regulators in mammals.

Underwood JG, Boutz PL, Dougherty JD, Stoilov P, Black DL.

Mol Cell Biol. 2005 Nov;25(22):10005-16.

PMID:
16260614
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Targeting BACE1 with siRNAs ameliorates Alzheimer disease neuropathology in a transgenic model.

Singer O, Marr RA, Rockenstein E, Crews L, Coufal NG, Gage FH, Verma IM, Masliah E.

Nat Neurosci. 2005 Oct;8(10):1343-9. Epub 2005 Aug 28.

PMID:
16136043
[PubMed - indexed for MEDLINE]
16.

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.

Siepel A, Bejerano G, Pedersen JS, Hinrichs AS, Hou M, Rosenbloom K, Clawson H, Spieth J, Hillier LW, Richards S, Weinstock GM, Wilson RK, Gibbs RA, Kent WJ, Miller W, Haussler D.

Genome Res. 2005 Aug;15(8):1034-50. Epub 2005 Jul 15.

PMID:
16024819
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Embryonic stem cell differentiation: emergence of a new era in biology and medicine.

Keller G.

Genes Dev. 2005 May 15;19(10):1129-55. Review.

PMID:
15905405
[PubMed - indexed for MEDLINE]
Free Article
18.

Tissue-dependent isoforms of mammalian Fox-1 homologs are associated with tissue-specific splicing activities.

Nakahata S, Kawamoto S.

Nucleic Acids Res. 2005 Apr 11;33(7):2078-89. Print 2005.

PMID:
15824060
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Stem cells may reshape the prospect of Parkinson's disease therapy.

Sonntag KC, Simantov R, Isacson O.

Brain Res Mol Brain Res. 2005 Mar 24;134(1):34-51. Review.

PMID:
15790528
[PubMed - indexed for MEDLINE]
20.

Identification and analysis of alternative splicing events conserved in human and mouse.

Yeo GW, Van Nostrand E, Holste D, Poggio T, Burge CB.

Proc Natl Acad Sci U S A. 2005 Feb 22;102(8):2850-5. Epub 2005 Feb 11.

PMID:
15708978
[PubMed - indexed for MEDLINE]
Free PMC Article

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