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References for PMC Articles for PubMed (Select 19128795)


Genome-scale DNA methylation maps of pluripotent and differentiated cells.

Meissner A, Mikkelsen TS, Gu H, Wernig M, Hanna J, Sivachenko A, Zhang X, Bernstein BE, Nusbaum C, Jaffe DB, Gnirke A, Jaenisch R, Lander ES.

Nature. 2008 Aug 7;454(7205):766-70. doi: 10.1038/nature07107. Epub 2008 Jul 6.


Combinatorial patterns of histone acetylations and methylations in the human genome.

Wang Z, Zang C, Rosenfeld JA, Schones DE, Barski A, Cuddapah S, Cui K, Roh TY, Peng W, Zhang MQ, Zhao K.

Nat Genet. 2008 Jul;40(7):897-903. doi: 10.1038/ng.154. Epub 2008 Jun 15.


Lineage-specific polycomb targets and de novo DNA methylation define restriction and potential of neuronal progenitors.

Mohn F, Weber M, Rebhan M, Roloff TC, Richter J, Stadler MB, Bibel M, Schübeler D.

Mol Cell. 2008 Jun 20;30(6):755-66. doi: 10.1016/j.molcel.2008.05.007. Epub 2008 May 29.


Differential H3K4 methylation identifies developmentally poised hematopoietic genes.

Orford K, Kharchenko P, Lai W, Dao MC, Worhunsky DJ, Ferro A, Janzen V, Park PJ, Scadden DT.

Dev Cell. 2008 May;14(5):798-809. doi: 10.1016/j.devcel.2008.04.002.


Hematopoietic fingerprints: an expression database of stem cells and their progeny.

Chambers SM, Boles NC, Lin KY, Tierney MP, Bowman TV, Bradfute SB, Chen AJ, Merchant AA, Sirin O, Weksberg DC, Merchant MG, Fisk CJ, Shaw CA, Goodell MA.

Cell Stem Cell. 2007 Nov;1(5):578-91. doi: 10.1016/j.stem.2007.10.003.


Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells.

Pan G, Tian S, Nie J, Yang C, Ruotti V, Wei H, Jonsdottir GA, Stewart R, Thomson JA.

Cell Stem Cell. 2007 Sep 13;1(3):299-312. doi: 10.1016/j.stem.2007.08.003.


Whole-genome mapping of histone H3 Lys4 and 27 trimethylations reveals distinct genomic compartments in human embryonic stem cells.

Zhao XD, Han X, Chew JL, Liu J, Chiu KP, Choo A, Orlov YL, Sung WK, Shahab A, Kuznetsov VA, Bourque G, Oh S, Ruan Y, Ng HH, Wei CL.

Cell Stem Cell. 2007 Sep 13;1(3):286-98. doi: 10.1016/j.stem.2007.08.004.


Three-dimensional organization of gene expression in erythroid cells.

de Laat W, Klous P, Kooren J, Noordermeer D, Palstra RJ, Simonis M, Splinter E, Grosveld F.

Curr Top Dev Biol. 2008;82:117-39. doi: 10.1016/S0070-2153(07)00005-1. Review.


Ex vivo-generated CD36+ erythroid progenitors are highly permissive to human parvovirus B19 replication.

Wong S, Zhi N, Filippone C, Keyvanfar K, Kajigaya S, Brown KE, Young NS.

J Virol. 2008 Mar;82(5):2470-6. Epub 2007 Dec 26.


A chromatin landmark and transcription initiation at most promoters in human cells.

Guenther MG, Levine SS, Boyer LA, Jaenisch R, Young RA.

Cell. 2007 Jul 13;130(1):77-88.


Genome-wide maps of chromatin state in pluripotent and lineage-committed cells.

Mikkelsen TS, Ku M, Jaffe DB, Issac B, Lieberman E, Giannoukos G, Alvarez P, Brockman W, Kim TK, Koche RP, Lee W, Mendenhall E, O'Donovan A, Presser A, Russ C, Xie X, Meissner A, Wernig M, Jaenisch R, Nusbaum C, Lander ES, Bernstein BE.

Nature. 2007 Aug 2;448(7153):553-60. Epub 2007 Jul 1.


High-resolution profiling of histone methylations in the human genome.

Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, Wei G, Chepelev I, Zhao K.

Cell. 2007 May 18;129(4):823-37.


Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome.

Weber M, Hellmann I, Stadler MB, Ramos L, Pääbo S, Rebhan M, Schübeler D.

Nat Genet. 2007 Apr;39(4):457-66. Epub 2007 Mar 4.


Genetic and epigenetic regulators of pluripotency.

Surani MA, Hayashi K, Hajkova P.

Cell. 2007 Feb 23;128(4):747-62. Review.


Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome.

Heintzman ND, Stuart RK, Hon G, Fu Y, Ching CW, Hawkins RD, Barrera LO, Van Calcar S, Qu C, Ching KA, Wang W, Weng Z, Green RD, Crawford GE, Ren B.

Nat Genet. 2007 Mar;39(3):311-8. Epub 2007 Feb 4.


B-cell development fails in the absence of the Pbx1 proto-oncogene.

Sanyal M, Tung JW, Karsunky H, Zeng H, Selleri L, Weissman IL, Herzenberg LA, Cleary ML.

Blood. 2007 May 15;109(10):4191-9. Epub 2007 Jan 23.


Genome-wide prediction of conserved and nonconserved enhancers by histone acetylation patterns.

Roh TY, Wei G, Farrell CM, Zhao K.

Genome Res. 2007 Jan;17(1):74-81. Epub 2006 Nov 29.


Transcription factor profiling in individual hematopoietic progenitors by digital RT-PCR.

Warren L, Bryder D, Weissman IL, Quake SR.

Proc Natl Acad Sci U S A. 2006 Nov 21;103(47):17807-12. Epub 2006 Nov 10.


The genomic landscape of histone modifications in human T cells.

Roh TY, Cuddapah S, Cui K, Zhao K.

Proc Natl Acad Sci U S A. 2006 Oct 24;103(43):15782-7. Epub 2006 Oct 16.


Evidence for diversity in transcriptional profiles of single hematopoietic stem cells.

Ramos CA, Bowman TA, Boles NC, Merchant AA, Zheng Y, Parra I, Fuqua SA, Shaw CA, Goodell MA.

PLoS Genet. 2006 Sep 29;2(9):e159. Epub 2006 Aug 9. Erratum in: PLoS Genet. 2006 Nov;2(11):e201.

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